Variant Results

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Results for "SCGN"

Variant Events: 8

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
SCGN	5-5020-003	chr6: 25651704-25651704	G	GTA	upstream		De novo					-	-	Trost2022 G
SCGN	SSC04797	chr6: 25669825-25669825	G	A	intronic		De novo					-	-	Trost2022 G
SCGN	2-1437-004	chr6: 25661841-25661842	CC	G	exonic		De novo	frameshift substitution	NM_006998	c.215_216G	N/A	-	-	Trost2022 G Zhou2022 GE
SCGN	11456.p1	chr6: 25698118-25698118	T	C	intronic		De novo					-	-	Turner2016 G
SCGN	14637.p1	chr6: 25722185-25722185	G	T	intergenic		De novo					-	-	Turner2016 G
SCGN	AU3517302	chr6: 25665779-25665779	A	C	intronic		De novo					-	-	Yuen2017 G
SCGN	A1	chr6: 25706911-25706911	G	A	intergenic		De novo					-	-	Wu2018 G
SCGN	12693.p1	chr6: 25669825-25669825	G	A	intronic		De novo					-	-	Iossifov2014 E Kosmicki2017 E Satterstrom2020 E

Source Variant Information

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Paper Information

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Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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