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Results for "PCDH1"

Variant Events: 6

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
PCDH1     13023.p1chr5:
141243011-141243011
CAexonicDe novononsynonymous SNVNM_001278615
NM_001278613
NM_002587
NM_032420
c.G1748T
c.G2933T
c.G2885T
c.G2885T
p.S583I
p.S978I
p.S962I
p.S962I
17.23-Iossifov2014 E
Ji2016 E
Kosmicki2017 E
Lim2017 E
Satterstrom2020 E
Turner2016 G
PCDH1     1-0325-003chr5:
141249505-141249505
CTintronicDe novo--Yuen2017 G
PCDH1     AU1436302chr5:
141233956-141233956
CTexonicDe novononsynonymous SNVNM_032420c.G3365Ap.R1122Q3.1621.734E-5Satterstrom2020 E
PCDH1     1-0489-003chr5:
141264862-141264877
ATGTGTGTGTGTGTGTATGTGTGTGTGTGTintergenicDe novo--Yuen2017 G
PCDH1     1-0191-003chr5:
141248230-141248230
GAexonicDe novosynonymous SNVNM_001278613
NM_002587
NM_032420
c.C855T
c.C807T
c.C807T
p.T285T
p.T269T
p.T269T
-2.56E-5Yuen2017 G
PCDH1     2-0286-004chr5:
141244257-141244257
GAexonicDe novononsynonymous SNVNM_001278615
NM_001278613
NM_002587
NM_032420
c.C502T
c.C1687T
c.C1639T
c.C1639T
p.P168S
p.P563S
p.P547S
p.P547S
10.588.242E-6Yuen2015 G
Yuen2017 G
Source Variant Information

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Source:

Paper alias:

No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notesView
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