Variant Results

or

Results for "LINC01060"

Variant Events: 86

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

LINC01060

2-1230-003

chr4:
190065258-190065258

C

T

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01060

AU2437302

chr4:
189796389-189796389

G

T

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0339-004

chr4:
190283499-190283503

TCAAA

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2437302

chr4:
190001942-190001942

C

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2035301

chr4:
190122847-190122847

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2035301

chr4:
190126032-190126032

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0299-003

chr4:
189386380-189386380

G

A

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

2-1269-003

chr4:
189845505-189845505

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01060

2-1352-003

chr4:
190562988-190562988

C

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0135-003

chr4:
189475992-189475992

T

G

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

AU4089302

chr4:
190531627-190531627

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0597-003

chr4:
190137443-190137443

T

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1635-004

chr4:
189602616-189602616

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2988302

chr4:
189431665-189431667

TAA

TAAAA

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

1-0804-003

chr4:
189417153-189417153

G

C

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

AU2248302

chr4:
189802524-189802524

C

G

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0271-004

chr4:
190296486-190296486

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4483301

chr4:
190129175-190129175

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1407-003

chr4:
189553529-189553534

AGGGGG

AGGGGGG

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1429-004

chr4:
189929583-189929583

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0458-004

chr4:
189803457-189803459

CTT

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0208-004

chr4:
189627534-189627534

T

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1567-004

chr4:
190221132-190221132

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1620-004

chr4:
189636543-189636543

C

A

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0566-003

chr4:
190051616-190051616

C

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU3858303

chr4:
189389396-189389396

C

T

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

5-0095-003

chr4:
190130545-190130545

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU1404302

chr4:
190028263-190028263

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2029303

chr4:
189495206-189495206

C

T

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

AU3646301

chr4:
190434229-190434229

G

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4015301

chr4:
189910077-189910077

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1358-003

chr4:
190169557-190169557

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1356-003

chr4:
189745712-189745720

GCACACACA

GCACACACACA

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2975302

chr4:
190510171-190510171

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0303-004

chr4:
190116821-190116821

G

T

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1160-003

chr4:
189835016-189835016

C

G

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0367-003

chr4:
189664564-189664564

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU3801301

chr4:
190204614-190204614

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0354-006

chr4:
189393729-189393729

C

T

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

1-0436-003

chr4:
190463703-190463703

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01060

2-0208-003

chr4:
189627534-189627534

T

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4067303

chr4:
190123712-190123712

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0142-003

chr4:
189571486-189571486

T

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0019-004

chr4:
189654402-189654402

C

CAGGAT

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4426303

chr4:
190159495-190159495

A

C

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4243302

chr4:
190517001-190517007

CAGAGAG

CAG

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0973-003

chr4:
190274477-190274477

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

5-0015-004

chr4:
189729608-189729608

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0554-003

chr4:
189884008-189884008

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0986-003

chr4:
190395153-190395153

A

G

intergenic

De novo

-

6.836E-5

Yuen2017 G

LINC01060

2-1283-004

chr4:
189524888-189524888

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

AU4237304

chr4:
190320486-190320486

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0295-004

chr4:
190408489-190408489

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1269-003

chr4:
190565087-190565090

TGGG

TGG

intergenic

De novo

-

Yuen2017 G

LINC01060

AU3057302

chr4:
189536722-189536722

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

5-0046-003

chr4:
189428366-189428366

G

A

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

AU2029302

chr4:
189495206-189495206

C

T

ncRNA_intronic

De novo

-

Yuen2017 G

LINC01060

1-0674-003

chr4:
189560451-189560451

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0129-005

chr4:
189643408-189643408

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU1987304

chr4:
190049804-190049804

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

A1

chr4:
190422314-190422314

C

T

intergenic

De novo

-

Wu2018 G

LINC01060

AU2022302

chr4:
189920395-189920395

G

T

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0972-003

chr4:
189896945-189896957

AGTTGTTGTTGTT

AGTTGTTGTT

intergenic

De novo

-

Yuen2017 G

LINC01060

7-0250-003

chr4:
189605309-189605309

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0346-004

chr4:
189727503-189727503

T

A

intergenic

De novo

-

Yuen2017 G

LINC01060

AU3861301

chr4:
190561899-190561899

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0079-008

chr4:
189842838-189842838

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

AU031404

chr4:
189954429-189954429

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

1-0414-005

chr4:
190237556-190237558

ACT

A

intergenic

De novo

-

Yuen2017 G

LINC01060

3-0431-000

chr4:
189458918-189458918

T

C

ncRNA_intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01060

1-0755-003

chr4:
190492035-190492035

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1258-003

chr4:
190202397-190202397

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

7-0140-003

chr4:
190425257-190425257

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1283-003

chr4:
189524888-189524888

T

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0305-003

chr4:
189533025-189533025

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1153-003

chr4:
189771204-189771204

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01060

3-0430-000

chr4:
190503467-190503467

T

A

intergenic

De novo

-

Yuen2016 G

LINC01060

2-1605-003

chr4:
190291737-190291737

C

CCGGAGTCATTTTCACGCAGTCAT

intergenic

De novo

-

Yuen2017 G

LINC01060

2-1646-003

chr4:
190327911-190327911

C

T

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2035302

chr4:
190122847-190122847

A

G

intergenic

De novo

-

Yuen2017 G

LINC01060

AU2035302

chr4:
190126032-190126032

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

11456.p1

chr4:
190093622-190093622

G

A

intergenic

De novo

-

Turner2016 G

LINC01060

11252.p1

chr4:
190288151-190288151

A

G

intergenic

De novo

-

Turner2016 G

LINC01060

7-0223-003

chr4:
189654777-189654777

G

C

intergenic

De novo

-

Yuen2017 G

LINC01060

2-0297-004

chr4:
190502022-190502022

G

A

intergenic

De novo

-

Yuen2017 G

LINC01060

7-0102-003

chr4:
190322817-190322817

A

G

intergenic

De novo

-

Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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