Variant Results

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Results for "PLEKHN1"

Variant Events: 6

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
PLEKHN1	SP0021287	chr1: 901926-901926	C	T	exonic		De novo	synonymous SNV	NM_001160184 NM_032129	c.C15T c.C15T	p.H5H p.H5H	-	-	Fu2022 E
PLEKHN1	SP0053415	chr1: 906494-906494	G	A	exonic		De novo	nonsynonymous SNV	NM_001160184 NM_032129	c.G650A c.G614A	p.R217H p.R205H	0.521	9.584E-5	Fu2022 E
PLEKHN1	JASD_Fam0077	chr1: 905674-905674	G	A	exonic		De novo	synonymous SNV	NM_001160184 NM_032129	c.G201A c.G201A	p.E67E p.E67E	-	-	Takata2018 E
PLEKHN1	AU2787301	chr1: 910460-910460	G	A	UTR3		De novo					-	-	Yuen2017 G
PLEKHN1	iHART1029	chr1: 905962-905962	C	A	exonic		Maternal	stopgain	NM_001160184 NM_032129	c.C392A c.C392A	p.S131X p.S131X	18.48	8.387E-6	Ruzzo2019 G
PLEKHN1	2-1178-003	chr1: 908494-908494	C	T	intronic		De novo					-	-	Yuen2016 G Yuen2017 G

Source Variant Information

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Paper Information

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Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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