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Results for "LMTK3"

Variant Events: 7

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
LMTK3     13092.p1 Complex Event; expand row to view variants  De novostopgain, frameshift insertionNM_001080434
NM_001080434
c.920_921insCTGACCT
c.919_920insCTGACCT
p.L307_T308delinsLX
p.L307fs
--Dong2014 E
Iossifov2012 E
Iossifov2014 E
Ji2016 E
Kosmicki2017 E
Satterstrom2020 E
Wilfert2021 G
Willsey2013 E
LMTK3     7-0254-004chr19:
49040430-49040440
TTGTAGCGATGTTGintergenicDe novo--Yuen2017 G
LMTK3     2-0304-004chr19:
49016530-49016531
TATupstreamDe novo--Yuen2017 G
LMTK3     JASD_Fam0031chr19:
48997134-48997134
GAexonicDe novosynonymous SNVNM_001080434c.C3996Tp.P1332P--Takata2018 E
LMTK3     JASD_Fam0031chr19:
48997119-48997119
TAexonicDe novosynonymous SNVNM_001080434c.A4011Tp.A1337A--Takata2018 E
LMTK3     11641.p1chr19:
49002894-49002894
CGexonicDe novononsynonymous SNVNM_001080434c.G1519Cp.E507Q20.5-Satterstrom2020 E
LMTK3     1-0590-003chr19:
49002675-49002676
GCGexonicDe novoframeshift deletionNM_001080434c.1737delGp.E579fs--Yuen2017 G
Source Variant Information

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Source:

Paper alias:

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Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notesView
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