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Results for "SHANK2"
Variant Events: 227
Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
SHANK2
2-1129-003
Complex Event; expand row to view variants
De novo
-
-
Trost2022
G
Yuen2016
G
Yuen2017
G
SHANK2
1-0677-003
chr11:
70380022-70380022
C
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
7-0174-003
chr11:
71018656-71018656
T
G
intergenic
De novo
-
-
Yuen2017
G
SHANK2
1-0253-004
chr11:
70380896-70380896
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
1-0530-003
chr11:
71034073-71034073
G
A
intergenic
De novo
-
-
Yuen2016
G
Yuen2017
G
SHANK2
12380.p1
chr11:
70332092-70332094
CTG
C
exonic
Unknown, De novo
frameshift deletion
NM_133266
c.2540_2541del
p.S847fs
-
-
Iossifov2014
E
Ji2016
E
Kosmicki2017
E
Satterstrom2020
E
Trost2022
G
Wang2020
T
Wilfert2021
G
Willsey2013
E
Zhou2022
G
E
SHANK2
1-0169-004
chr11:
70515179-70515179
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
2-1391-004
chr11:
70445947-70445948
AG
A
intronic
De novo
-
-
Yuen2017
G
SHANK2
74-0115
chr11:
71103740-71103740
A
C
intergenic
De novo
-
-
Michaelson2012
G
SHANK2
3-0456-000
chr11:
70544556-70544556
C
T
intronic
De novo
-
-
Yuen2016
G
Yuen2017
G
SHANK2
AU071703
chr11:
70803515-70803515
C
T
exonic
Unknown
unknown
24.6
4.601E-5
Stessman2017
T
SHANK2
AU054304
chr11:
70769891-70769891
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
ACGC_M15036
chr11:
70332552-70332552
G
A
exonic
Unknown
synonymous SNV
NM_133266
c.C2082T
p.Y694Y
-
3.298E-5
Wang2020
T
SHANK2
AU2075301
chr11:
70799643-70799643
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
Leuven2_60356400
chr11:
70666548-70666548
G
A
exonic
Unknown
unknown
17.19
-
Wang2020
T
SHANK2
Leuven_405458
chr11:
70666548-70666548
G
A
exonic
Unknown
unknown
17.19
-
Wang2020
T
SHANK2
1-0075-003
chr11:
70697001-70697001
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
PN400501
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
AGRE_AU071703
chr11:
70803515-70803515
C
T
exonic
Unknown
unknown
24.6
4.601E-5
Wang2020
T
SHANK2
AGRE_03C16378
chr11:
70803515-70803515
C
T
exonic
Unknown
unknown
24.6
4.601E-5
Wang2020
T
SHANK2
2-0298-003
chr11:
70377333-70377333
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
1-0455-004
chr11:
70330136-70330136
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M03813
chr11:
70332898-70332898
C
T
exonic
Maternal
nonsynonymous SNV
NM_133266
c.G1736A
p.G579D
3.12
-
Guo2018
T
SHANK2
3-0456-000B
chr11:
70544556-70544556
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M19664
chr11:
70821045-70821045
C
A
exonic
Maternal
unknown
12.27
-
Guo2018
T
SHANK2
M08314
chr11:
70803628-70803628
A
G
exonic
Maternal
unknown
15.42
-
Guo2018
T
SHANK2
M20738
chr11:
70824391-70824391
A
A/G
exonic
Maternal
-
-
Guo2018
T
SHANK2
M23679
chr11:
70336459-70336459
T
G
exonic
Maternal
nonsynonymous SNV
NM_133266
c.A709C
p.T237P
9.687
-
Guo2018
T
SHANK2
TASC_211-5435-4
chr11:
70666749-70666749
G
A
exonic
Unknown
unknown
18.94
-
Wang2020
T
SHANK2
M16089
chr11:
70333178-70333178
C
T
exonic
Maternal
nonsynonymous SNV
NM_133266
c.G1456A
p.V486I
11.88
3.471E-5
Guo2018
T
SHANK2
Leuven_299053
chr11:
70666749-70666749
G
A
exonic
Unknown
unknown
18.94
-
Wang2020
T
SHANK2
M08485
chr11:
70346692-70346692
G
A
exonic
Maternal
nonsynonymous SNV
NM_133266
c.C527T
p.S176L
17.49
-
Guo2018
T
SHANK2
M08515
chr11:
70336459-70336459
T
G
exonic
Maternal
nonsynonymous SNV
NM_133266
c.A709C
p.T237P
9.687
-
Guo2018
T
SHANK2
ACGC_HN0112.p1
chr11:
70507786-70507786
G
C
exonic
De novo
stopgain
NM_133266
c.C87G
p.Y29X
37.0
-
Wang2020
T
SHANK2
2-1207-003
chr11:
70716492-70716492
G
A
intronic
De novo
-
-
Yuen2016
G
Yuen2017
G
SHANK2
Gecz4_48759
chr11:
70805627-70805627
C
T
exonic
Unknown
unknown
20.2
-
Wang2020
T
SHANK2
ACGC_HEN0171.p1
chr11:
70805627-70805627
C
T
exonic
Unknown
unknown
20.2
-
Wang2020
T
SHANK2
108070-100
chr11:
70803488-70803488
C
G
exonic
Unknown
unknown
26.2
-
Stessman2017
T
SHANK2
2-0198-003
chr11:
70568291-70568291
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
2-1131-003
chr11:
71114941-71114941
C
G
intergenic
De novo
-
-
Yuen2017
G
SHANK2
2-0299-003
chr11:
70512026-70512026
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
HN0074.p1
chr11:
70332443-70332443
C
T
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G2191A
p.V731M
17.17
8.24E-6
Guo2018
T
SHANK2
GX0325.p1
chr11:
70336401-70336401
A
G
exonic
Paternal
nonsynonymous SNV
NM_133266
c.T767C
p.M256T
15.98
8.243E-6
Guo2018
T
SHANK2
HN0037.p1
chr11:
70332912-70332912
C
G
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G1722C
p.E574D
6.322
-
Guo2018
T
SHANK2
Leuven_305385
chr11:
70505962-70505962
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G268A
p.G90R
32.0
1.65E-5
Wang2020
T
SHANK2
1-0277-003
chr11:
70319333-70319333
C
T
exonic
De novo
nonsynonymous SNV
NM_133266
c.G3427A
p.A1143T
7.19
-
Wang2020
T
Yuen2017
G
Zhou2022
G
E
SHANK2
PN400483
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
GX0441.p1
chr11:
70821058-70821058
C
C/T
exonic
Paternal
-
-
Guo2018
T
SHANK2
AGRE_AU1644303
chr11:
70805647-70805647
C
T
exonic
Unknown
unknown
27.3
4.604E-5
Wang2020
T
SHANK2
AGRE_AU1181303
chr11:
70348922-70348922
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G412A
p.D138N
22.5
8.332E-6
Wang2020
T
SHANK2
AGRE_03C16187
chr11:
70348919-70348919
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G415A
p.D139N
18.89
8.389E-6
Wang2020
T
SHANK2
1-0104-003
chr11:
70914484-70914492
ATAAAGGGT
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M32019
chr11:
70666515-70666515
C
C/T
exonic
Paternal
-
-
Guo2018
T
SHANK2
ACGC_HEN0059.p1
chr11:
70332687-70332688
CT
C
exonic
Unknown
frameshift deletion
NM_133266
c.1946delA
p.E649fs
-
-
Wang2020
T
SHANK2
GX0409.p1
chr11:
70507869-70507869
T
C
exonic
Paternal
nonsynonymous SNV
NM_133266
c.A4G
p.M2V
15.77
-
Guo2018
T
SHANK2
ACGC_GX0546.p1
chr11:
70332687-70332688
CT
C
exonic
Unknown
frameshift deletion
NM_133266
c.1946delA
p.E649fs
-
-
Wang2020
T
SHANK2
M30889
chr11:
70666755-70666755
G
A/G
exonic
Paternal
-
-
Guo2018
T
SHANK2
Leuven2_82947565
chr11:
70338480-70338480
C
G
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G635C
p.R212P
29.8
2.538E-5
Wang2020
T
SHANK2
GX0233.p1
chr11:
70666746-70666746
G
A/G
exonic
Paternal
-
-
Guo2018
T
SHANK2
ACGC_HEN0078.p1
chr11:
70332687-70332688
CT
C
exonic
Unknown
frameshift deletion
NM_133266
c.1946delA
p.E649fs
-
-
Wang2020
T
SHANK2
ACGC_HEN0243.p1
chr11:
70332333-70332333
G
A
exonic
Unknown
synonymous SNV
NM_133266
c.C2301T
p.T767T
-
1.651E-5
Wang2020
T
SHANK2
Leuven_393327
chr11:
70666591-70666591
G
A
exonic
Unknown
unknown
-
3.0E-4
Wang2020
T
SHANK2
ACGC_M32301
chr11:
70666569-70666569
C
T
exonic
Unknown
unknown
15.31
-
Wang2020
T
SHANK2
AGRE_AU0906301
chr11:
70505950-70505950
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G280A
p.G94R
26.2
8.253E-6
Wang2020
T
SHANK2
ACGC_HEN0333.p1
chr11:
70332852-70332852
G
A
exonic
Unknown
synonymous SNV
NM_133266
c.C1782T
p.P594P
-
1.72E-5
Wang2020
T
SHANK2
AU027506
Complex Event; expand row to view variants
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
ACGC_M31992
chr11:
70666569-70666569
C
T
exonic
Unknown
unknown
15.31
-
Wang2020
T
SHANK2
3-0458-000A
chr11:
71003796-71003796
T
C
intergenic
De novo
-
-
Yuen2017
G
SHANK2
AU066403
chr11:
70908689-70908689
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
SP0160736
chr11:
70332049-70332049
G
T
exonic
stopgain
NM_133266
c.C2585A
p.S862X
39.0
-
Zhou2022
G
E
SHANK2
SP0198200
chr11:
70332183-70332183
A
T
exonic
De novo
nonsynonymous SNV
NM_133266
c.T2451A
p.F817L
10.31
-
Trost2022
G
Zhou2022
G
E
SHANK2
SP0198200
chr11:
70332176-70332177
TA
T
exonic
De novo
frameshift deletion
NM_133266
c.2457delT
p.F819fs
-
-
Trost2022
G
Zhou2022
G
E
SHANK2
5-5185-003
chr11:
70395216-70395216
G
T
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0475-000
chr11:
70440816-70440816
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1751-003
chr11:
70372636-70372636
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
PN400267
chr11:
70824387-70824387
A
T
exonic
Unknown
unknown
18.29
0.0046
Leblond2019
E
SHANK2
2-1781-003
chr11:
70387039-70387039
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
MSSNG00219-003
chr11:
70364287-70364287
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
SP0264333
chr11:
70333635-70333636
CT
C
exonic
frameshift deletion
NM_133266
c.998delA
p.K333fs
-
-
Zhou2022
G
E
SHANK2
4-0026-003
chr11:
70369140-70369140
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
5-2005-003
chr11:
70317267-70317273
CTATCTG
C
UTR3
De novo
-
-
Trost2022
G
SHANK2
SP0055686
chr11:
70333899-70333899
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
ACGC_HEN0344.p1
chr11:
70666542-70666542
G
A
exonic
Maternal
unknown
21.0
-
Wang2020
T
SHANK2
7-0385-003
chr11:
70544071-70544071
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
ACGC_HEN0141.p1
chr11:
70644650-70644650
C
T
exonic
Maternal
unknown
29.5
4.993E-5
Wang2020
T
SHANK2
MSSNG00369-005
chr11:
70550955-70550955
G
T
intronic
De novo
-
-
Trost2022
G
SHANK2
5-0067-003
chr11:
70504007-70504007
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
ACGC_M17580
chr11:
70666719-70666719
G
A
exonic
Maternal
unknown
20.2
-
Wang2020
T
SHANK2
1-0562-003
chr11:
70511884-70511884
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
GX0379.p1
chr11:
70332529-70332529
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G2105A
p.R702Q
9.616
4.121E-5
Guo2018
T
SHANK2
MSSNG00013-004
chr11:
70453309-70453309
G
T
intronic
De novo
-
-
Trost2022
G
SHANK2
AU3801301
chr11:
70753191-70753191
C
T
intronic
De novo
-
-
Yuen2017
G
SHANK2
1-1126-003
chr11:
70455461-70455461
C
A
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0431-000
chr11:
70899650-70899650
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2016
G
Yuen2017
G
SHANK2
ITAN_2428
chr11:
70829955-70829955
G
A
exonic
Maternal
unknown
17.81
-
Wang2020
T
SHANK2
7-0352-003
chr11:
70441327-70441327
G
T
intronic
De novo
-
-
Trost2022
G
SHANK2
ITAN_1435
chr11:
70644617-70644617
C
T
exonic
Maternal
unknown
32.0
-
Wang2020
T
SHANK2
MSSNG00199-003
chr11:
70452647-70452647
T
C
intronic
De novo
-
-
Trost2022
G
SHANK2
SJD_55.3
chr11:
70658921-70658921
T
C
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1398-004
chr11:
70695571-70695581
AGCAGGCTGTG
A
intronic
De novo
-
-
Trost2022
G
SHANK2
MT_81.3
chr11:
70649450-70649450
T
C
intronic
De novo
-
-
Trost2022
G
SHANK2
10C108736
chr11:
70336411-70336411
G
A
exonic
De novo
stopgain
NM_133266
c.C757T
p.R253X
24.1
-
Fu2022
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
SHANK2
3-0713-000
chr11:
70650968-70650968
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
AU059003
chr11:
70648233-70648233
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
AU2437302
chr11:
70649450-70649450
T
A
intronic
De novo
-
-
Trost2022
G
SHANK2
MSSNG00243-003
chr11:
70585032-70585032
A
C
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0050-000
chr11:
70644157-70644157
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
5-5015-003
chr11:
70732896-70732896
A
C
intronic
De novo
-
-
Trost2022
G
SHANK2
2-0310-003
chr11:
71037590-71037590
G
A
intergenic
De novo
-
-
Yuen2017
G
SHANK2
AU2308301
chr11:
70739797-70739797
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
MSSNG00011-004
chr11:
70725423-70725423
T
C
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0066-001
chr11:
70729071-70729071
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1237-004
chr11:
70712205-70712205
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0731-001A
chr11:
70721828-70721828
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
2-0198-004
chr11:
70959668-70959668
G
A
intergenic
De novo
-
-
Yuen2017
G
SHANK2
MSSNG00364-003
chr11:
70698568-70698568
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0700-004
chr11:
70701575-70701575
C
G
intronic
De novo
-
-
Trost2022
G
SHANK2
AU071203
chr11:
70559756-70559756
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
1-0481-003
chr11:
70801929-70801935
TGGGATC
GAGAAACT
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0051-004
chr11:
70801929-70801935
TGGGATC
GAGAAACT
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1360-003
chr11:
70780048-70780048
C
A
intronic
De novo
-
-
Trost2022
G
SHANK2
PN400486
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
1-0481-003
chr11:
70801925-70801925
T
TC
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0464-003
chr11:
71113580-71113580
G
A
intergenic
De novo
-
-
Yuen2016
G
Yuen2017
G
SHANK2
7-0395-003
chr11:
70754478-70754478
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
10-1127-003A
chr11:
70754559-70754559
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
7-0233-004
chr11:
70741480-70741480
G
C
intronic
De novo
-
-
Trost2022
G
SHANK2
3-0191-000
chr11:
70748013-70748013
G
C
intronic
De novo
-
-
Trost2022
G
SHANK2
5-5131-003
chr11:
70810703-70810703
C
G
intronic
De novo
-
-
Trost2022
G
SHANK2
5-5027-003
chr11:
70817151-70817152
TA
T
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0440-003
chr11:
70804116-70804116
T
A
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0362-003
chr11:
70806801-70806801
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
PN400380
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
1-0481-003
chr11:
70801940-70801942
TCT
G
intronic
De novo
-
-
Trost2022
G
SHANK2
1-0051-004
chr11:
70801940-70801942
TCT
G
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1644-003
chr11:
70801929-70801935
TGGGATC
GAGAAACT
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1644-003
chr11:
70801940-70801942
TCT
G
intronic
De novo
-
-
Trost2022
G
SHANK2
MT_70.3
chr11:
70918987-70918987
C
CTA
intronic
De novo
-
-
Trost2022
G
SHANK2
171-08-109761
chr11:
70332049-70332049
G
T
exonic
De novo
stopgain
NM_133266
c.C2585A
p.S862X
39.0
-
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
SHANK2
MSSNG00343-003
chr11:
70843607-70843607
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
4-0090-003
chr11:
70857793-70857793
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
MSSNG00340-004
chr11:
70824155-70824155
C
T
intronic
De novo
-
-
Trost2022
G
SHANK2
MSSNG00364-004
chr11:
70829036-70829036
G
A
intronic
De novo
-
-
Trost2022
G
SHANK2
2-1459-003
chr11:
70386149-70386149
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2016
G
Yuen2017
G
SHANK2
ITAN_2176
chr11:
70348920-70348920
G
A
exonic
Maternal
synonymous SNV
NM_133266
c.C414T
p.D138D
3.697
-
Wang2020
T
SHANK2
HN0112.p1
chr11:
70507786-70507786
G
C
exonic
De novo
stopgain
NM_133266
c.C87G
p.Y29X
37.0
-
Guo2018
T
SHANK2
3-0458-000B
chr11:
71003796-71003796
T
C
intergenic
De novo
-
-
Yuen2017
G
SHANK2
AU4433301
chr11:
70647236-70647236
A
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
HEN0141.p1
chr11:
70644650-70644650
C
T
exonic
Maternal
unknown
29.5
4.993E-5
Guo2018
T
SHANK2
1-0441-003
chr11:
70336411-70336411
G
A
exonic
De novo
stopgain
NM_133266
c.C757T
p.R253X
24.1
-
Wang2020
T
Yuen2016
G
Yuen2017
G
Zhou2022
G
E
SHANK2
AU4336301
chr11:
70818978-70818978
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M15036
chr11:
70332552-70332552
G
A
exonic
Inherited
synonymous SNV
NM_133266
c.C2082T
p.Y694Y
-
3.298E-5
Stessman2017
T
SHANK2
M08903
chr11:
70332422-70332422
T
C
exonic
Paternal
nonsynonymous SNV
NM_133266
c.A2212G
p.N738D
0.001
8.24E-6
Guo2018
T
SHANK2
M19792
chr11:
70332329-70332329
C
T
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G2305A
p.G769S
12.69
2.477E-5
Guo2018
T
SHANK2
HEN0344.p1
chr11:
70666542-70666542
G
A
exonic
Maternal
unknown
21.0
-
Guo2018
T
SHANK2
HEN0080.p1
chr11:
70666515-70666515
C
T
exonic
Maternal
unknown
11.14
-
Guo2018
T
SHANK2
HEN0031.p1
chr11:
70829919-70829919
G
A
exonic
Maternal
unknown
15.7
4.813E-5
Guo2018
T
SHANK2
HEN0214.p1
chr11:
70805714-70805714
C
T
exonic
Maternal
unknown
13.98
4.529E-5
Guo2018
T
SHANK2
M08656
chr11:
70824391-70824391
A
A/G
exonic
Paternal
-
-
Guo2018
T
SHANK2
SF0136425.p1
chr11:
70336493-70336493
C
T
splicing
splicing
17.85
-
Wang2020
T
SHANK2
M20665
chr11:
70824356-70824356
C
T
exonic
Paternal
unknown
14.33
-
Guo2018
T
SHANK2
M08500
chr11:
70858195-70858195
G
A
exonic
Paternal
unknown
13.17
1.0E-4
Guo2018
T
SHANK2
1-0019-004
chr11:
70416269-70416269
C
T
intronic
De novo
-
-
Yuen2017
G
SHANK2
M08440
chr11:
70824391-70824391
A
A/G
exonic
Paternal
-
-
Guo2018
T
SHANK2
M23785
chr11:
70333178-70333178
C
T
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G1456A
p.V486I
11.88
3.471E-5
Guo2018
T
SHANK2
M01813
chr11:
70332639-70332639
C
G
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G1995C
p.M665I
12.17
8.25E-6
Guo2018
T
SHANK2
M15191
chr11:
70666751-70666751
C
T
exonic
Paternal
unknown
16.13
-
Guo2018
T
SHANK2
M17534
chr11:
70507806-70507806
A
G
exonic
Paternal
nonsynonymous SNV
NM_133266
c.T67C
p.C23R
13.26
-
Guo2018
T
SHANK2
AU2019302
chr11:
70810949-70810949
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M17580
chr11:
70666719-70666719
G
A
exonic
Maternal, Unknown
unknown
20.2
-
Guo2018
T
Stessman2017
T
SHANK2
ACGC_M30889
chr11:
70666755-70666755
G
A
exonic
Paternal
unknown
21.1
1.0E-4
Wang2020
T
SHANK2
SP0062760
chr11:
70507825-70507825
C
T
exonic
De novo
synonymous SNV
NM_133266
c.G48A
p.T16T
10.84
4.119E-5
Fu2022
E
Trost2022
G
Zhou2022
G
E
SHANK2
ACGC_M15191
chr11:
70666751-70666751
C
T
exonic
Paternal
unknown
16.13
-
Wang2020
T
SHANK2
SP0136425
chr11:
70336493-70336493
C
T
splicing
De novo
splicing
17.85
-
Fu2022
E
Trost2022
G
Zhou2022
G
E
SHANK2
SP0048613
chr11:
70333544-70333544
A
AGTACATCCCCTTCTCCCTCATCATGGTG
exonic
De novo
frameshift insertion
NM_133266
c.1089_1090insCACCATGATGAGGGAGAAGGGGATGTAC
p.F364fs
-
-
Fu2022
E
Zhou2022
G
E
SHANK2
2-0198-005
chr11:
70959668-70959668
G
A
intergenic
De novo
-
-
Yuen2017
G
SHANK2
M21695
chr11:
70333110-70333110
C
A
exonic
Paternal, Inherited
nonsynonymous SNV
NM_133266
c.G1524T
p.R508S
15.87
-
Guo2018
T
Stessman2017
T
SHANK2
14015.p1
chr11:
70533721-70533721
T
G
intronic
De novo
-
-
Turner2016
G
SHANK2
PN400514
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
Radboud_10-10578
chr11:
70644587-70644587
C
T
exonic
Paternal
unknown
20.3
5.012E-5
Wang2020
T
SHANK2
10004871007410237-C
chr11:
70653185-70653186
TC
T
exonic
De novo
unknown
-
-
Fu2022
E
SHANK2
AU3632301
chr11:
70796081-70796081
C
T
intronic
De novo
-
-
Yuen2017
G
SHANK2
Radboud_10-10576
chr11:
70644587-70644587
C
T
exonic
Paternal
unknown
20.3
5.012E-5
Wang2020
T
SHANK2
PN400279
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
ACGC_HEN0004.p1
chr11:
70332546-70332546
G
A
exonic
Unknown
synonymous SNV
NM_133266
c.C2088T
p.T696T
-
8.243E-6
Wang2020
T
SHANK2
AU1940304
Complex Event; expand row to view variants
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
08C74824
chr11:
70653238-70653238
G
A
exonic
De novo
unknown
14.44
-
Fu2022
E
SHANK2
GEA430
chr11:
70798895-70798895
C
CG
intronic
De novo
-
9.076E-5
Fu2022
E
SHANK2
HEN0361.p1
chr11:
70332577-70332577
C
T
exonic
Paternal
nonsynonymous SNV
NM_133266
c.G2057A
p.R686K
12.85
3.301E-5
Guo2018
T
SHANK2
TASC_219-2325-0001
chr11:
70338495-70338495
G
A
exonic
Unknown
nonsynonymous SNV
NM_133266
c.C620T
p.A207V
20.6
8.396E-6
Wang2020
T
SHANK2
3-0458-000
chr11:
71003796-71003796
T
C
intergenic
De novo
-
-
Yuen2016
G
SHANK2
HEN0171.p1
chr11:
70805627-70805627
C
T
exonic
Unknown
unknown
20.2
-
Guo2018
T
SHANK2
PN400515
chr11:
70644619-70644619
C
T
exonic
Unknown
unknown
24.2
0.0049
Leblond2019
E
SHANK2
AU3951301
chr11:
70474718-70474718
G
A
intronic
De novo
-
-
Yuen2017
G
SHANK2
2-1508-003
chr11:
70680877-70680877
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
M32289
chr11:
70829927-70829927
C
T
exonic
Maternal
unknown
33.0
4.741E-5
Guo2018
T
SHANK2
Ishay2021:30
chr11:
70653185-70653186
TC
T
exonic
De novo
unknown
-
-
Ishay2021
E
SHANK2
AU2513301
chr11:
70653238-70653238
G
A
exonic
unknown
14.44
-
Zhou2022
G
E
SHANK2
AU4467302
chr11:
71053450-71053450
C
T
intergenic
De novo
-
-
Yuen2017
G
SHANK2
SP0052138
chr11:
70319250-70319250
C
T
exonic
De novo
synonymous SNV
NM_133266
c.G3510A
p.A1170A
-
2.0E-4
Trost2022
G
Zhou2022
G
E
SHANK2
03C16187
chr11:
70348919-70348919
C
T
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G415A
p.D139N
18.89
8.389E-6
Stessman2017
T
SHANK2
08C74281
chr11:
70319333-70319333
C
T
exonic
De novo
nonsynonymous SNV
NM_133266
c.G3427A
p.A1143T
7.19
-
Fu2022
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
SHANK2
03C16378
chr11:
70803515-70803515
C
T
exonic
Unknown
unknown
24.6
4.601E-5
Stessman2017
T
SHANK2
PN400317
chr11:
70824387-70824387
A
T
exonic
Unknown
unknown
18.29
0.0046
Leblond2019
E
SHANK2
AU3905301
chr11:
70569568-70569568
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
1-0273-004
chr11:
70546281-70546281
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
2-0145-004
chr11:
70483437-70483437
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
1-0936-003
chr11:
70697189-70697189
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
PN400321
chr11:
70824387-70824387
A
T
exonic
Unknown
unknown
18.29
0.0046
Leblond2019
E
SHANK2
2-0214-004
chr11:
71038934-71038934
A
T
intergenic
De novo
-
-
Yuen2017
G
SHANK2
Leuven2_60356116
chr11:
70829916-70829916
C
T
exonic
Unknown
unknown
31.0
-
Wang2020
T
SHANK2
AU3124302
chr11:
70491419-70491419
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
Leuven_85885770
chr11:
70824394-70824394
C
T
exonic
Unknown
unknown
31.0
-
Wang2020
T
SHANK2
SAGE_BK831-01
chr11:
70829966-70829966
G
A
exonic
Unknown
unknown
26.7
-
Wang2020
T
SHANK2
AU2100302
chr11:
70401856-70401856
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SHANK2
GX0432.p1
chr11:
70332470-70332470
A
A/C
exonic
Maternal
-
-
Guo2018
T
SHANK2
ACGC_M21695
chr11:
70333110-70333110
C
A
exonic
Unknown
nonsynonymous SNV
NM_133266
c.G1524T
p.R508S
15.87
-
Wang2020
T
SHANK2
Leuven_300450
chr11:
70829982-70829982
C
T
exonic
Unknown
unknown
27.1
-
Wang2020
T
SHANK2
GX0430.p1
chr11:
70805614-70805614
G
C/G
exonic
Maternal
-
-
Guo2018
T
SHANK2
GX0444.p1
chr11:
70332709-70332709
G
C
exonic
Maternal
nonsynonymous SNV
NM_133266
c.C1925G
p.S642C
9.744
-
Guo2018
T
SHANK2
GX0240.p1
chr11:
70858251-70858251
G
A/G
exonic
Maternal
-
-
Guo2018
T
SHANK2
GX0358.p1
chr11:
70830059-70830059
G
C/G
exonic
Maternal
-
-
Guo2018
T
SHANK2
mAGRE5936
chr11:
70794457-70794457
C
T
intronic
Paternal
17.45
-
Cirnigliaro2023
G
SHANK2
mAGRE5935
chr11:
70794457-70794457
C
T
intronic
Paternal
17.45
-
Cirnigliaro2023
G
SHANK2
219-2325-0001
chr11:
70338495-70338495
G
A
exonic
Unknown
nonsynonymous SNV
NM_133266
c.C620T
p.A207V
20.6
8.396E-6
Stessman2017
T
SHANK2
2-1303-003
chr11:
70505417-70505417
C
T
intronic
De novo
-
-
Yuen2017
G
SHANK2
1-0197-004
chr11:
70546607-70546607
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
Source Variant Information
?
, -
Source:
Paper alias:
No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes
View
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