Variant Results

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Results for "TNFSF10"

Variant Events: 17

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

TNFSF10

2-1283-004

chr3:
172325103-172325103

G

GAAAAAAAAAAACTCCATCAC

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

7-0024-005

chr3:
172311354-172311354

G

C

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

1-0303-004

chr3:
172253729-172253729

C

T

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

AU055603

chr3:
172234148-172234148

G

T

intronic

De novo

-

-

Trost2022 G

TNFSF10

1-0534-006

chr3:
172325103-172325103

G

GAAAAAAAAAAACTCCATCAC

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

AU055603

chr3:
172234093-172234093

A

T

intronic

De novo

-

-

Trost2022 G

TNFSF10

14695.p1

chr3:
172224677-172224677

T

C

exonic

De novo

nonsynonymous SNV

NM_003810

c.A451G

p.I151V

15.3

-

Ji2016 E
Krumm2015 E
Zhou2022 GE

TNFSF10

1-0203-004

chr3:
172247593-172247593

T

G

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

1-0259-005

chr3:
172306884-172306884

G

A

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

SP0088523

chr3:
172232759-172232759

A

G

exonic

De novo

synonymous SNV

NM_001190942
NM_003810

c.T162C
c.T162C

p.I54I
p.I54I

-

-

Fu2022 E
Trost2022 G
Zhou2022 GE

TNFSF10

1-0744-003

chr3:
172295608-172295608

C

T

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

1-0826-003

chr3:
172293132-172293132

C

T

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

1-0534-003

chr3:
172325103-172325103

G

GAAAAAAAAAACTCCATCAC

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

1-0609-003

chr3:
172263637-172263658

GTATTTATTTATTTATTTATTT

GTATTTATTTATTTATTTATTTATTT

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

2-1497-003

chr3:
172332119-172332119

G

A

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

2-1336-004

chr3:
172255720-172255720

G

A

intergenic

De novo

-

-

Yuen2017 G

TNFSF10

AU3122301

chr3:
172268761-172268770

TCCTCCTCCC

TCCTCCTCCCTCCTCCC

intergenic

De novo

-

-

Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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