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Results for "PTPRT"

Variant Events: 181

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
PTPRT     2-1442-003chr20:
41657372-41657372
ACintronicDe novo--Trost2022 G
Yuen2016 G
Yuen2017 G
PTPRT     1-0534-004chr20:
41512281-41512281
GGCACACACACCCATAintronicDe novo--Yuen2017 G
PTPRT     2-1220-003chr20:
41385165-41385165
GAexonicDe novononsynonymous SNVNM_007050
NM_133170
c.C796T
c.C796T
p.R266C
p.R266C
34.08.472E-6Yuen2016 G
Yuen2017 G
Zhou2022 GE
PTPRT     AU2495301chr20:
41226267-41226267
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU079605chr20:
41525088-41525088
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU2089301chr20:
41148389-41148389
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0324-003chr20:
41858069-41858069
CTintergenicDe novo--Yuen2017 G
PTPRT     1-0826-004chr20:
41512610-41512610
CCCCCTATintronicDe novo--Yuen2017 G
PTPRT     3-0246-000chr20:
41338836-41338836
GAintronicDe novo--Trost2022 G
Yuen2016 G
Yuen2017 G
PTPRT     2-0149-003chr20:
41103522-41103522
CAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-1265-003chr20:
41869894-41869894
CAintergenicDe novo--Yuen2016 G
Yuen2017 G
PTPRT     1-0009-004chr20:
41736000-41736000
ACintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU061104chr20:
41842616-41842616
TGintergenicDe novo--Yuen2017 G
PTPRT     1-0141-003chr20:
41260941-41260941
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3648301chr20:
42073656-42073656
GAintergenicDe novo--Yuen2017 G
PTPRT     2-1635-004chr20:
40842720-40842720
AGintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3617302chr20:
40998962-40998962
TCintronicDe novo--Yuen2017 G
PTPRT     AU1725306chr20:
41224819-41224819
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0175-003chr20:
41512283-41512283
AACACCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     7-0151-003chr20:
41060950-41060950
ATintronicDe novo--Yuen2017 G
PTPRT     AU3076302chr20:
40834264-40834264
CAintronicDe novo--Yuen2017 G
PTPRT     5-0017-004chr20:
41512263-41512263
AACTCATATGCTintronicDe novo--Yuen2017 G
PTPRT     AU075207chr20:
41720499-41720499
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU4197301chr20:
40727818-40727841
TCATTCATCCATTCATCCATTCATTCATTCATCCATTCATintronicDe novo--Yuen2017 G
PTPRT     1-0045-003chr20:
41487348-41487348
TTGCTAAGAAATTTATGAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-1485-004chr20:
40811904-40811904
TAintronicDe novo--Yuen2017 G
PTPRT     More2023:10chr20:
40735430-40735430
GCexonicInheritednonsynonymous SNVNM_007050
NM_133170
c.C3386G
c.C3443G
p.T1129R
p.T1148R
27.11.0E-4More2023 G
PTPRT     1-0914-003chr20:
41086681-41086681
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0045-003chr20:
41512252-41512252
AAATACACACCCACACCCCCATACACATGCACACACACTCCCintronicDe novo--Yuen2017 G
PTPRT     AU4473301chr20:
41372120-41372120
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-0003-004chr20:
41512263-41512263
AACACACTCATATGCTintronicDe novo--Yuen2017 G
PTPRT     2-1364-003chr20:
41968035-41968035
CTintergenicDe novo--Yuen2017 G
PTPRT     2-1266-003chr20:
42082225-42082225
CTintergenicDe novo--Yuen2016 G
Yuen2017 G
PTPRT     SP0089272chr20:
41818332-41818332
CGexonicDe novononsynonymous SNVNM_007050
NM_133170
c.G42C
c.G42C
p.R14S
p.R14S
7.644-Fu2022 E
Trost2022 G
Zhou2022 GE
PTPRT     1-0563-004chr20:
41218296-41218296
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     SP0048371chr20:
40790038-40790038
GAexonicDe novononsynonymous SNVNM_007050
NM_133170
c.C2636T
c.C2693T
p.T879M
p.T898M
23.63.313E-5Fu2022 E
Trost2022 G
Zhou2022 GE
PTPRT     2-1291-003chr20:
41618161-41618161
CGintronicDe novo--Trost2022 G
Yuen2016 G
Yuen2017 G
PTPRT     2-0019-004chr20:
41765115-41765115
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     SP0006271chr20:
40747136-40747136
CTexonicDe novosynonymous SNVNM_007050
NM_133170
c.G2889A
c.G2946A
p.P963P
p.P982P
-2.571E-5Fu2022 E
Trost2022 G
Zhou2022 GE
PTPRT     1-0965-003chr20:
42004321-42004321
TCintergenicDe novo--Yuen2017 G
PTPRT     2-1261-004chr20:
41699275-41699275
CAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3451301chr20:
41339569-41339569
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU066206chr20:
42011126-42011126
GAintergenicDe novo--Yuen2017 G
PTPRT     2-1461-003chr20:
40998713-40998713
GAintronicDe novo--Trost2022 G
Yuen2016 G
Yuen2017 G
PTPRT     2-1620-003chr20:
41512610-41512610
CCCCCTATintronicDe novo--Yuen2017 G
PTPRT     1336001chr20:
40738945-40738945
CTintronicDe novo--Satterstrom2020 E
Trost2022 G
PTPRT     AU3874303chr20:
41451374-41451374
AGintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3713301chr20:
41546624-41546624
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU4032306 Complex Event; expand row to view variants  De novo--Trost2022 G
Yuen2017 G
PTPRT     AU3779301chr20:
40905567-40905567
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     5-0110-003chr20:
41669636-41669636
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU000704chr20:
41504816-41504816
TGintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-1723-003chr20:
40748044-40748045
GTAAintronicDe novo--Trost2022 G
PTPRT     2-0149-004chr20:
41512278-41512278
TTACACACACACCCATACACintronicDe novo--Yuen2017 G
PTPRT     2-0286-003chr20:
41512610-41512610
CCCCCTATACACTCCCATintronicDe novo--Yuen2017 G
PTPRT     2-1235-004chr20:
41503544-41503544
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     7-0059-003chr20:
41092073-41092073
TAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     MT_192.3 Complex Event; expand row to view variants  De novo--Trost2022 G
Trost2022 G
PTPRT     4-0092-003chr20:
40909155-40909155
GAintronicDe novo--Trost2022 G
PTPRT     AU2463301chr20:
40879361-40879361
GAintronicDe novo--Trost2022 G
PTPRT     3-0477-000chr20:
40871299-40871299
TCintronicDe novo--Trost2022 G
PTPRT     2-1562-004chr20:
41512263-41512263
AACCintronicDe novo--Yuen2017 G
PTPRT     1-0300-004chr20:
40841890-40841896
GCCCACTAAAGGCCintronicDe novo--Trost2022 G
PTPRT     AU057503chr20:
41622729-41622729
CTintronicDe novo--Yuen2017 G
PTPRT     7-0392-003chr20:
40800916-40800916
ATintronicDe novo--Trost2022 G
PTPRT     1-0972-003chr20:
41919856-41919856
CTintergenicDe novo--Yuen2017 G
PTPRT     4-0046-004chr20:
40777493-40777493
CTintronicDe novo--Trost2022 G
PTPRT     2-1644-003chr20:
40748044-40748045
GTAAintronicDe novo--Trost2022 G
PTPRT     AU3703302chr20:
41415675-41415675
AGintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     5-5123-005chr20:
41029985-41029985
CTintronicDe novo--Trost2022 G
PTPRT     08C75650chr20:
41385165-41385165
GAexonicDe novononsynonymous SNVNM_007050
NM_133170
c.C796T
c.C796T
p.R266C
p.R266C
34.08.472E-6Satterstrom2020 E
Trost2022 G
Zhou2022 GE
PTPRT     2-1535-003chr20:
41004793-41004793
CTintronicDe novo--Trost2022 G
PTPRT     3-0221-000chr20:
40994045-40994045
ATintronicDe novo--Trost2022 G
PTPRT     PN400289chr20:
40733279-40733279
CTexonicUnknownnonsynonymous SNVNM_007050
NM_133170
c.G3470A
c.G3527A
p.R1157H
p.R1176H
33.01.0E-4Leblond2019 E
PTPRT     3-0380-000chr20:
40991412-40991412
CAintronicDe novo--Trost2022 G
PTPRT     1-0242-003chr20:
40991240-40991240
ATintronicDe novo--Trost2022 G
PTPRT     AU2310301chr20:
40956184-40956184
GAintronicDe novo--Trost2022 G
PTPRT     5-5031-003chr20:
40954691-40954691
AGintronicDe novo--Trost2022 G
PTPRT     3-0447-000chr20:
40927603-40927603
TTAintronicDe novo--Trost2022 G
PTPRT     1-0090-003chr20:
41274562-41274562
AGintronicDe novo--Trost2022 G
PTPRT     2-1722-003chr20:
41267349-41267349
AATintronicDe novo--Trost2022 G
PTPRT     MSSNG00434-003chr20:
41258435-41258435
TCintronicDe novo--Trost2022 G
PTPRT     2-1091-003chr20:
41107298-41107298
CTintronicDe novo--Trost2022 G
PTPRT     AU2310301chr20:
41093686-41093686
CTintronicDe novo--Trost2022 G
PTPRT     MSSNG00369-005chr20:
41092871-41092871
GAintronicDe novo--Trost2022 G
PTPRT     2-1766-003chr20:
41091796-41091796
TAintronicDe novo--Trost2022 G
PTPRT     4-0056-003chr20:
41053862-41053862
CAintronicDe novo--Trost2022 G
PTPRT     7-0100-004chr20:
41353632-41353632
CTintronicDe novo--Trost2022 G
PTPRT     7-0100-004chr20:
41353626-41353626
TGintronicDe novo--Trost2022 G
PTPRT     1-0269-003chr20:
40840663-40840663
CCCAATTTCAAATTGGAAintronicDe novo--Yuen2017 G
PTPRT     7-0388-003chr20:
41346450-41346450
ACintronicDe novo--Trost2022 G
PTPRT     MT_69.3chr20:
41318496-41318496
CTintronicDe novo--Trost2022 G
PTPRT     MSSNG00365-003chr20:
41309809-41309809
CTintronicDe novo--Trost2022 G
PTPRT     2-0307-003chr20:
41512612-41512612
CCATintronicDe novo--Yuen2017 G
PTPRT     SP0145140chr20:
41306478-41306478
TCintronicDe novo--Trost2022 G
PTPRT     1-1121-003chr20:
41301749-41301749
GTintronicDe novo--Trost2022 G
PTPRT     MSSNG00331-003chr20:
41301319-41301319
CTintronicDe novo--Trost2022 G
PTPRT     2-0013-003chr20:
41512248-41512252
TGTGACACACCCTCCATACACACATACACCCCCintronicDe novo--Trost2022 G
PTPRT     2-1540-003chr20:
41502261-41502261
AGintronicDe novo--Trost2022 G
PTPRT     REACH000194chr20:
41476542-41476542
TCintronicDe novo--Trost2022 G
PTPRT     3-0708-000chr20:
41464133-41464134
GTAAintronicDe novo--Trost2022 G
PTPRT     MSSNG00042-004chr20:
41430489-41430489
TTGintronicDe novo--Trost2022 G
PTPRT     7-0321-003Achr20:
41421886-41421886
GAintronicDe novo--Trost2022 G
PTPRT     3-0719-000chr20:
41379618-41379618
ACintronicDe novo--Trost2022 G
PTPRT     MSSNG00353-003chr20:
41366046-41366046
GAintronicDe novo--Trost2022 G
PTPRT     2-1243-003chr20:
41512267-41512267
AATACAGACAGACCCCCintronicDe novo--Trost2022 G
PTPRT     2-1286-003chr20:
41512266-41512266
CCCCCAintronicDe novo--Trost2022 G
PTPRT     3-0515-000chr20:
41512264-41512264
CCATACACAintronicDe novo--Trost2022 G
PTPRT     1-0412-003chr20:
41512264-41512264
CCCCTintronicDe novo--Trost2022 G
PTPRT     2-1286-003chr20:
41512264-41512264
CCATACACAintronicDe novo--Trost2022 G
PTPRT     2-1277-004chr20:
41428430-41428430
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-1277-003chr20:
41512260-41512260
CCCCTCCATintronicDe novo--Trost2022 G
PTPRT     1-0412-003chr20:
41512258-41512258
CCATGCATintronicDe novo--Trost2022 G
PTPRT     3-0437-000chr20:
41945818-41945818
TGintergenicDe novo--Yuen2016 G
PTPRT     3-0198-000chr20:
41512252-41512252
AAATACACACACACCCATACACACATACACCCCCintronicDe novo--Trost2022 G
PTPRT     2-1437-003chr20:
41696822-41696822
AAAGGGAAGAAGintronicDe novo--Yuen2017 G
PTPRT     3-0630-000chr20:
41536628-41536628
AGintronicDe novo--Trost2022 G
PTPRT     2-1169-003chr20:
41512629-41512629
GCCAintronicDe novo--Trost2022 G
PTPRT     1-0651-003chr20:
42044895-42044895
CGintergenicDe novo--Yuen2017 G
PTPRT     AU3997301chr20:
41710846-41710846
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     4-0049-003chr20:
41512290-41512291
GCCATAintronicDe novo--Trost2022 G
PTPRT     1-0651-003chr20:
41760603-41760603
ACintronicDe novo--Yuen2017 G
PTPRT     7-0254-004chr20:
41445907-41445907
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3874301chr20:
41427052-41427052
GCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3885304chr20:
40918192-40918192
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0261-003chr20:
41512290-41512290
GCTTATACACTCintronicDe novo--Trost2022 G
PTPRT     2-1148-004chr20:
41512289-41512290
CGACCCATACACACACCintronicDe novo--Trost2022 G
PTPRT     1-0018-003chr20:
41512274-41512275
TGCACCCCTTACACCCCintronicDe novo--Trost2022 G
PTPRT     2-0068-003chr20:
41512274-41512275
TGCACCCCTTACACCCCintronicDe novo--Trost2022 G
PTPRT     1-0412-003chr20:
41512274-41512275
TGCATAintronicDe novo--Trost2022 G
PTPRT     2-1066-004chr20:
41561392-41561393
CTAAintronicDe novo--Trost2022 G
PTPRT     MSSNG00441-003chr20:
41561005-41561005
CTintronicDe novo--Trost2022 G
PTPRT     AU2571301chr20:
41552789-41552789
CTintronicDe novo--Trost2022 G
PTPRT     3-0295-000chr20:
41551747-41551747
CGintronicDe novo--Trost2022 G
PTPRT     2-0159-003chr20:
41550010-41550010
CTintronicDe novo--Trost2022 G
PTPRT     2-1519-006chr20:
41543028-41543028
TGintronicDe novo--Trost2022 G
PTPRT     MSSNG00421-004chr20:
41541535-41541535
TCintronicDe novo--Trost2022 G
PTPRT     2-1723-003chr20:
41539643-41539643
GAintronicDe novo--Trost2022 G
PTPRT     AU3702306chr20:
40946082-40946082
ACintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-1233-003chr20:
41714931-41714931
CTintronicDe novo--Trost2022 G
PTPRT     1-1184-003chr20:
41708021-41708021
AGintronicDe novo--Trost2022 G
PTPRT     MSSNG00218-003chr20:
41679129-41679129
CTintronicDe novo--Trost2022 G
PTPRT     2-1806-003chr20:
41676799-41676799
GCintronicDe novo--Trost2022 G
PTPRT     MSSNG00423-004chr20:
41626652-41626652
CAintronicDe novo--Trost2022 G
PTPRT     2-1619-003chr20:
41512610-41512610
CCCCCTATintronicDe novo--Yuen2017 G
PTPRT     AU3713302chr20:
41084031-41084031
TCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     REACH000643chr20:
41610145-41610145
CTintronicDe novo--Trost2022 G
PTPRT     1-0906-003chr20:
41589444-41589453
GAAGCACCCTGintronicDe novo--Trost2022 G
PTPRT     7-0389-003chr20:
41580465-41580465
CTintronicDe novo--Trost2022 G
PTPRT     AU2123302chr20:
41282739-41282739
GTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-1116-003chr20:
41805065-41805065
GCintronicDe novo--Trost2022 G
PTPRT     2-1518-003chr20:
41834010-41834010
TGintergenicDe novo--Yuen2017 G
PTPRT     REACH000144chr20:
41794656-41794656
GAintronicDe novo--Trost2022 G
PTPRT     7-0179-003chr20:
41527697-41527697
GAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU2283301chr20:
41789219-41789219
GAintronicDe novo--Trost2022 G
PTPRT     05HI3916Achr20:
41101200-41101200
GTexonicDe novononsynonymous SNVNM_007050
NM_133170
c.C1156A
c.C1156A
p.P386T
p.P386T
23.8-Fu2022 E
Satterstrom2020 E
Trost2022 G
Zhou2022 GE
PTPRT     1-1026-003chr20:
41777119-41777119
CAintronicDe novo--Trost2022 G
PTPRT     4-0075-003chr20:
41776920-41776920
GAintronicDe novo--Trost2022 G
PTPRT     13942.p1chr20:
41067667-41067667
TCintronicDe novo--Turner2016 G
PTPRT     REACH000209chr20:
41723064-41723064
GTintronicDe novo--Trost2022 G
PTPRT     2-1270-005chr20:
41719399-41719399
ATintronicDe novo--Trost2022 G
PTPRT     AU2355301chr20:
41715900-41715900
TCintronicDe novo--Trost2022 G
PTPRT     14370.p1chr20:
41420515-41420515
CTintronicDe novo--Turner2016 G
PTPRT     12011.p1chr20:
41420813-41420813
CTintronicDe novo--Turner2016 G
PTPRT     7-0035-003chr20:
41901320-41901320
GAintergenicDe novo--Yuen2017 G
PTPRT     2-1089-003chr20:
41512255-41512255
AACACATGintronicDe novo--Yuen2017 G
PTPRT     10003901002775381-Cchr20:
40727169-40727169
GAexonicDe novosynonymous SNVNM_007050
NM_133170
c.C3738T
c.C3795T
p.F1246F
p.F1265F
-8.289E-6Fu2022 E
PTPRT     1-0203-004chr20:
41661967-41661967
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     10002061014362068-Cchr20:
40735426-40735430
CTCTGCexonicDe novoframeshift deletionNM_007050
NM_133170
c.3386_3389del
c.3443_3446del
p.T1129fs
p.T1148fs
--Fu2022 E
PTPRT     MSSNG00253-003chr20:
41815988-41815988
TCintronicDe novo--Trost2022 G
PTPRT     AU3907301chr20:
40791757-40791757
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU3907301chr20:
42011432-42011432
CTintergenicDe novo--Yuen2017 G
PTPRT     12198.p1chr20:
41419995-41419995
AGexonicDe novononsynonymous SNVNM_007050
NM_133170
c.T326C
c.T326C
p.F109S
p.F109S
18.378.29E-6Ji2016 E
Krumm2015 E
PTPRT     2-1485-003chr20:
40811904-40811904
TAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0215-006chr20:
41125125-41125125
CTintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-0070-004chr20:
41632688-41632688
GCintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     1-0044-003chr20:
41859957-41859957
CAintergenicDe novo--Yuen2017 G
PTPRT     2-0310-003chr20:
41324799-41324799
CAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     AU2458302chr20:
41932154-41932154
CTintergenicDe novo--Yuen2017 G
PTPRT     2-0310-003chr20:
41195812-41195812
CAintronicDe novo--Trost2022 G
Yuen2017 G
PTPRT     2-1456-003chr20:
42051892-42051892
TCintergenicDe novo--Yuen2017 G
Source Variant Information

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Paper Information
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Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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