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Results for "PATJ"
Variant Events: 87
Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
PATJ
2-1154-003
chr1:
62658407-62658407
T
G
intergenic
De novo
-
-
Yuen2017
G
PATJ
1-0458-003
chr1:
62624277-62624277
C
A
intronic
De novo
-
-
Yuen2017
G
PATJ
1-0144-004
chr1:
62655471-62655471
C
T
intergenic
De novo
-
-
Yuen2017
G
PATJ
MT_57.3
chr1:
62222390-62222390
A
G
intronic
De novo
-
-
Trost2022
G
PATJ
MSSNG00378-003
chr1:
62219908-62219908
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
MSSNG00383-003
chr1:
62262698-62262698
C
T
intronic
De novo
-
-
Trost2022
G
PATJ
3-0662-000
chr1:
62261091-62261091
G
T
intronic
De novo
-
1.0E-4
Trost2022
G
PATJ
AU2089302
chr1:
62585855-62585855
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
MSSNG00242-003
chr1:
62464579-62464579
A
G
intronic
De novo
-
-
Trost2022
G
PATJ
7-0361-003
chr1:
62348849-62348849
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
2-0103-004
chr1:
62490225-62490225
G
GGAT
intronic
De novo
-
-
Trost2022
G
PATJ
1-0611-003
chr1:
62476647-62476647
A
C
intronic
De novo
-
-
Trost2022
G
PATJ
2-1753-003
chr1:
62291389-62291389
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
PN400341
chr1:
62574145-62574145
G
C
exonic
Unknown
nonsynonymous SNV
NM_176877
c.G4414C
p.A1472P
29.9
2.498E-5
Leblond2019
E
PATJ
MSSNG00438-003
chr1:
62279183-62279183
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
7-0408-003
chr1:
62331764-62331764
C
T
intronic
De novo
-
-
Trost2022
G
PATJ
5-2005-003
chr1:
62302454-62302454
C
T
intronic
De novo
-
-
Trost2022
G
PATJ
7-0024-003
chr1:
62575092-62575093
GG
CT
intronic
De novo
-
-
Trost2022
G
PATJ
3-0475-000
chr1:
62570613-62570613
C
T
intronic
De novo
-
-
Trost2022
G
PATJ
mAGRE1754
chr1:
62614060-62614064
AGAGT
A
exonic
Paternal
frameshift deletion
NM_176877
c.5377_5378del
p.E1793fs
-
4.969E-5
Cirnigliaro2023
G
PATJ
2-1086-004
chr1:
62602478-62602478
G
C
intronic
De novo
-
-
Trost2022
G
PATJ
mAGRE1751
chr1:
62614060-62614064
AGAGT
A
exonic
Paternal
frameshift deletion
NM_176877
c.5377_5378del
p.E1793fs
-
4.969E-5
Cirnigliaro2023
G
PATJ
2-1086-004
chr1:
62602474-62602474
T
TC
intronic
De novo
-
-
Trost2022
G
PATJ
AU3368303
chr1:
62550218-62550219
CG
C
exonic
Paternal
frameshift deletion
NM_176877
c.4276delG
p.A1426fs
-
-
Cirnigliaro2023
G
PATJ
MSSNG00421-004
chr1:
62497156-62497156
G
T
intronic
De novo
-
-
Trost2022
G
PATJ
AU3368302
chr1:
62550218-62550219
CG
C
exonic
Paternal
frameshift deletion
NM_176877
c.4276delG
p.A1426fs
-
-
Cirnigliaro2023
G
PATJ
5-5146-003
chr1:
62494820-62494820
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
mAGRE1912
chr1:
62366953-62366953
G
A
splicing
Paternal
splicing
23.0
8.667E-6
Cirnigliaro2023
G
PATJ
1-0630-003
chr1:
62548795-62548795
C
CGTT
intronic
De novo
-
-
Trost2022
G
PATJ
mAGRE2411
chr1:
62241004-62241004
C
T
exonic
Maternal
stopgain
NM_176877
c.C847T
p.R283X
39.0
8.27E-6
Cirnigliaro2023
G
PATJ
7-0141-003
chr1:
62588653-62588653
T
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
3-0795-000
chr1:
62503355-62503355
T
G
intronic
De novo
-
-
Trost2022
G
PATJ
3-0515-000
chr1:
62624235-62624235
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
AU3786301
Complex Event; expand row to view variants
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
AU057503
chr1:
62624130-62624130
A
G
intronic
De novo
-
-
Trost2022
G
PATJ
3-0515-000
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
1-0289-003
chr1:
62624235-62624235
T
C
intronic
De novo
-
-
Trost2022
G
PATJ
5-0055-004
chr1:
62623380-62623381
CC
GT
intronic
De novo
-
-
Trost2022
G
PATJ
5-0055-004
chr1:
62623374-62623375
GT
AC
intronic
De novo
-
-
Trost2022
G
PATJ
5-0055-004
chr1:
62623389-62623389
G
A
intronic
De novo
-
-
Trost2022
G
PATJ
5-0055-004
chr1:
62623385-62623385
C
A
intronic
De novo
-
-
Trost2022
G
PATJ
1-0197-004
chr1:
62657831-62657831
T
C
intergenic
De novo
-
-
Yuen2017
G
PATJ
1-0289-003
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
2-1168-003
chr1:
62445134-62445134
G
A
intronic
De novo
-
-
Yuen2017
G
PATJ
1-0332-003
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
2-1339-003
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
Cukier2014:17122
chr1:
62582847-62582847
C
G
exonic
Unknown
nonsynonymous SNV
NM_176877
c.C4847G
p.A1616G
18.62
0.013
Cukier2014
E
PATJ
1-0337-003
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
2-1562-004
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
2-1562-003
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
2-0144-004
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
1-0329-004
chr1:
62624249-62624250
CA
TG
intronic
De novo
-
-
Trost2022
G
PATJ
5-0015-004
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
11490.p1
chr1:
62327208-62327208
G
T
intronic
De novo
-
-
Krumm2015
E
PATJ
1-0289-003
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
2-0144-004
chr1:
62624307-62624310
GGTG
CGCT
intronic
De novo
-
-
Trost2022
G
PATJ
1-0329-004
chr1:
62624307-62624310
GGTG
CGCT
intronic
De novo
-
-
Trost2022
G
PATJ
1-0329-004
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
2-1562-004
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
1-0332-003
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
2-0144-004
chr1:
62624254-62624256
GTG
ATA
intronic
De novo
-
-
Trost2022
G
PATJ
AU3053302
chr1:
62378948-62378948
C
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
SP0044098
chr1:
62374032-62374032
T
G
intronic
De novo
-
-
Fu2022
E
PATJ
SP0034904
chr1:
62588733-62588733
A
G
intronic
De novo
-
-
Fu2022
E
Zhou2022
G
E
PATJ
AU0636303
chr1:
62325251-62325251
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
SP0078543
chr1:
62614103-62614103
C
A
intronic
De novo
-
-
Fu2022
E
PATJ
2-1347-003
chr1:
62624307-62624310
GGTG
CGCT
intronic
De novo
-
-
Trost2022
G
PATJ
1-0219-003
chr1:
62291136-62291136
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
2-0142-004
chr1:
62624307-62624310
GGTG
CGCT
intronic
De novo
-
-
Trost2022
G
PATJ
2-1347-003
chr1:
62624317-62624319
GGC
TGA
intronic
De novo
-
-
Trost2022
G
PATJ
2-0142-004
chr1:
62624317-62624319
GGC
TGA
intronic
De novo
-
-
Trost2022
G
PATJ
1-0079-008
chr1:
62535179-62535179
G
A
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
Kenny2014:1
chr1:
62321741-62321742
TC
T
exonic
Unknown
frameshift deletion
NM_176877
c.2153delC
p.S718fs
-
-
Kenny2014
T
PATJ
1-0007-003
chr1:
62604323-62604323
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
5111007080051-C
chr1:
62232230-62232230
C
T
intronic
De novo
-
-
Fu2022
E
PATJ
AU2569301
chr1:
62579917-62579917
C
T
exonic
De novo
stopgain
NM_176877
c.C4654T
p.R1552X
44.0
5.012E-5
Trost2022
G
Yuen2017
G
Zhou2022
G
E
PATJ
11402.p1
chr1:
62374072-62374072
C
T
exonic
Mosaic
nonsynonymous SNV
NM_176877
c.C3410T
p.S1137L
19.79
-
Dou2017
E
PATJ
5-0055-003
chr1:
62228363-62228363
G
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
AU003403
chr1:
62311337-62311337
A
G
intronic
De novo
-
-
Yuen2017
G
PATJ
1-0551-004
chr1:
62561747-62561747
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
1-0261-004
chr1:
62596547-62596547
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
1-0169-003
chr1:
62499320-62499320
A
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PATJ
iHART1751
chr1:
62614060-62614064
AGAGT
A
exonic
Paternal
frameshift deletion
NM_176877
c.5377_5378del
p.E1793fs
-
4.969E-5
Ruzzo2019
G
PATJ
AU4327303
chr1:
62656499-62656503
CCTCT
CCT
intergenic
De novo
-
-
Yuen2017
G
PATJ
iHART1912
chr1:
62366953-62366953
G
A
splicing
Paternal
splicing
23.0
8.667E-6
Ruzzo2019
G
PATJ
iHART1754
chr1:
62614060-62614064
AGAGT
A
exonic
Paternal
frameshift deletion
NM_176877
c.5377_5378del
p.E1793fs
-
4.969E-5
Ruzzo2019
G
PATJ
iHART2411
chr1:
62241004-62241004
C
T
exonic
Maternal
stopgain
NM_176877
c.C847T
p.R283X
39.0
8.27E-6
Ruzzo2019
G
Source Variant Information
?
, -
Source:
Paper alias:
No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes
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