Variant Results

or

Results for "NEGR1"

Variant Events: 147

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

NEGR1

3-0354-000

chr1:
72650936-72650936

T

C

intronic

De novo

-

Trost2022 G

NEGR1

2-0070-003

chr1:
72638880-72638880

A

G

intronic

De novo

-

Trost2022 G

NEGR1

7-0423-003

chr1:
72664293-72664293

T

A

intronic

De novo

-

Trost2022 G

NEGR1

T2T9E-01

chr1:
72653420-72653420

G

T

intronic

De novo

-

Trost2022 G

NEGR1

2-0070-003

chr1:
72638871-72638872

TA

AG

intronic

De novo

-

Trost2022 G

NEGR1

1-0484-003

chr1:
71938223-71938224

TG

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-0296-003

chr1:
72638758-72638758

T

C

intronic

De novo

-

Trost2022 G

NEGR1

5-0064-003

chr1:
73616625-73616625

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

AU049304

chr1:
72330904-72330904

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

3-0058-000

chr1:
72638871-72638872

TA

AG

intronic

De novo

-

Trost2022 G

NEGR1

5-0064-003

chr1:
73618255-73618255

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

3-0091-000

chr1:
72638871-72638872

TA

AG

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00378-003

chr1:
72728887-72728887

G

A

intronic

De novo

-

Trost2022 G

NEGR1

2-1192-003

chr1:
72725007-72725008

GG

AT

intronic

De novo

-

Trost2022 G

NEGR1

1-0067-005

chr1:
73409957-73409957

T

TAGGGACTGC

intergenic

De novo

-

Yuen2017 G

NEGR1

4-0009-003

chr1:
72696118-72696118

C

G

intronic

De novo

-

Trost2022 G

NEGR1

3-0438-000

chr1:
73652213-73652213

T

A

intergenic

De novo

-

Yuen2016 G

NEGR1

AU2320301

chr1:
72688523-72688523

T

G

intronic

De novo

-

Trost2022 G

NEGR1

1-0559-003

chr1:
73107849-73107849

T

A

intergenic

De novo

-

Yuen2017 G

NEGR1

3-0223-000

chr1:
72714505-72714505

A

G

intronic

De novo

-

Trost2022 G

NEGR1

5-0147-003

chr1:
72979764-72979764

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

7-0253-003

chr1:
73263173-73263173

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

7-0351-004

chr1:
72701083-72701083

C

T

intronic

De novo

-

Trost2022 G

NEGR1

5-0131-003

chr1:
72638813-72638813

A

C

intronic

De novo

-

Yuen2017 G

NEGR1

AU4067303

chr1:
73002283-73002283

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3849302

chr1:
71888351-71888351

C

G

intronic

De novo

-

Yuen2017 G

NEGR1

2-1299-003

chr1:
73699658-73699658

C

T

intergenic

De novo

-

Yuen2017 G

NEGR1

2-0116-004

chr1:
72088700-72088700

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-1255-003

chr1:
71999844-71999848

ACCCC

ACCC

intronic

De novo

-

Yuen2017 G

NEGR1

2-1475-003

chr1:
72692763-72692763

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-1475-003

chr1:
71988647-71988647

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

7-0175-003

chr1:
73635192-73635192

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1397-003

chr1:
72520278-72520278

A

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

AU2951302

chr1:
72303022-72303022

G

T

intronic

De novo

-

Yuen2017 G

NEGR1

AU4356302

chr1:
71892271-71892271

G

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

AU4145303

chr1:
73460156-73460156

A

AT

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1168-003

chr1:
73609619-73609619

A

T

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

NEGR1

2-0286-003

chr1:
73563382-73563382

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3955303

chr1:
72391383-72391383

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-0318-003

chr1:
72320585-72320585

G

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

AU3636302

chr1:
72640192-72640192

C

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

1-0582-003

chr1:
72365189-72365189

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

1-0582-003

chr1:
72325394-72325394

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-1085-003

chr1:
72105378-72105378

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-1169-003

chr1:
73089288-73089288

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

AU006804

chr1:
73192088-73192088

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

2-0013-003

chr1:
72746404-72746404

A

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

1-0512-003

chr1:
72172100-72172100

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

7-0106-003

chr1:
73555214-73555214

C

G

intergenic

De novo

-

Yuen2017 G

NEGR1

A2

chr1:
73536256-73536256

G

A

intergenic

De novo

-

Wu2018 G

NEGR1

5-0033-004

chr1:
73382776-73382777

CT

C

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0482-003

chr1:
73516291-73516291

C

T

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

NEGR1

2-0219-004

chr1:
72843696-72843696

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1487-003

chr1:
73301475-73301475

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0668-003

chr1:
72716084-72716084

A

G

intronic

De novo

-

Yuen2017 G

NEGR1

5-0133-003

chr1:
73083385-73083385

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0668-003

chr1:
72712564-72712564

G

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

1-0668-003

chr1:
72711574-72711574

G

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

AU3517302

chr1:
72028986-72028986

G

A

intronic

De novo

-

Yuen2017 G

NEGR1

3-0482-000

chr1:
73457702-73457702

C

T

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1345-003

chr1:
73267068-73267068

A

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

NEGR1

AU2787301

chr1:
73011082-73011082

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

AU066403

chr1:
72229828-72229828

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

5-0106-003

chr1:
73679291-73679291

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0452-003

chr1:
71955586-71955586

C

T

intronic

De novo

-

Yuen2016 G

NEGR1

AU3891304

chr1:
73289932-73289932

C

T

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1152-003

chr1:
71886690-71886690

T

G

intronic

De novo

-

Trost2022 G
Yuen2016 G
Yuen2017 G

NEGR1

1-0566-003

chr1:
71934727-71934727

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

5-0117-003

chr1:
72384915-72384915

G

T

intronic

De novo

-

Yuen2017 G

NEGR1

AU031204

chr1:
73335571-73335597

CAAGGAAGGAAGGAAGGAAGGAAGGAA

CAAGGAAGGAAGGAAGGAAGGAA

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3637301

chr1:
73458766-73458766

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0244-003

chr1:
73582487-73582487

G

T

intergenic

De novo

-

Yuen2016 G

NEGR1

1-0261-003

chr1:
72638847-72638847

A

G

intronic

De novo

-

Yuen2017 G

NEGR1

2-1085-004

chr1:
73249612-73249612

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0570-003

chr1:
71945560-71945560

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

7-0247-003

chr1:
73737880-73737880

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3761302

chr1:
73383223-73383223

G

T

intergenic

De novo

-

Yuen2017 G

NEGR1

2-1132-003

chr1:
73516049-73516049

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

3-0391-000

chr1:
72649896-72649896

C

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

2-1132-003

chr1:
73323281-73323281

C

T

intergenic

De novo

-

Yuen2017 G

NEGR1

13946.p1

chr1:
71976931-71976931

T

A

intronic

De novo

-

Turner2016 G

NEGR1

2-1303-003

chr1:
73282774-73282774

C

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

NEGR1

13515.p1

chr1:
72256825-72256825

A

G

intronic

De novo

-

Turner2016 G

NEGR1

11252.p1

chr1:
71927206-71927206

C

T

intronic

De novo

-

Turner2016 G

NEGR1

AU2951303

chr1:
72303022-72303022

G

T

intronic

De novo

-

Yuen2017 G

NEGR1

13023.p1

chr1:
73385468-73385468

T

C

intergenic

De novo

-

Turner2016 G

NEGR1

7-0001-003

chr1:
71767383-71767383

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0455-003

chr1:
72830751-72830751

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0486-003

chr1:
71774140-71774140

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

AU4103301

chr1:
73295650-73295650

G

A

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3680301

chr1:
73740348-73740348

A

G

intergenic

De novo

-

Yuen2017 G

NEGR1

AU4191302

chr1:
72636871-72636871

T

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

REACH000097

chr1:
71907997-71907997

T

TA

intronic

De novo

-

Trost2022 G

NEGR1

12651.p1

chr1:
73542237-73542237

A

G

intergenic

De novo

-

Werling2018 G

NEGR1

2-0238-004

chr1:
71865077-71865079

TAT

AAA

intergenic

De novo

-

Trost2022 G

NEGR1

1-0006-004

chr1:
72638864-72638864

A

T

intronic

De novo

-

Yuen2017 G

NEGR1

AU4306302

chr1:
73477754-73477759

CCTTCT

CCTTCTTCT

intergenic

De novo

-

Yuen2017 G

NEGR1

3-0407-000

chr1:
71961647-71961647

T

A

intronic

De novo

-

Trost2022 G

NEGR1

1-0731-003

chr1:
71923208-71923210

AAG

A

intronic

De novo

-

Trost2022 G

NEGR1

60-2027

chr1:
72896715-72896715

G

A

intergenic

De novo

-

Michaelson2012 G

NEGR1

7-0405-004

chr1:
72163205-72163205

C

A

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00250-003

chr1:
72095648-72095648

G

A

intronic

De novo

-

Trost2022 G

NEGR1

AU2310301

chr1:
72178232-72178232

A

C

intronic

De novo

-

Trost2022 G

NEGR1

REACH000555

chr1:
72171526-72171526

A

AGAAG

intronic

De novo

-

Trost2022 G

NEGR1

MT_78.3

chr1:
72038714-72038714

C

T

intronic

De novo

-

Trost2022 G

NEGR1

7-0233-004

chr1:
71971819-71971819

A

G

intronic

De novo

-

Trost2022 G

NEGR1

1-0286-004

chr1:
72612790-72612790

T

C

intronic

De novo

-

Yuen2017 G

NEGR1

REACH000727

chr1:
72060857-72060857

T

G

intronic

De novo

-

Trost2022 G

NEGR1

1-0339-004

chr1:
72875022-72875022

A

T

intergenic

De novo

-

Yuen2017 G

NEGR1

7-0071-003

chr1:
72046849-72046849

T

C

intronic

De novo

-

Trost2022 G

NEGR1

AU2310301

chr1:
72254680-72254680

T

C

intronic

De novo

-

Trost2022 G

NEGR1

AU2224301

chr1:
72249836-72249836

T

G

intronic

De novo

-

Trost2022 G

NEGR1

2-1702-003

chr1:
72945953-72945953

C

T

intergenic

De novo

-

Yuen2017 G

NEGR1

AU031403

chr1:
72540615-72540615

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

NEGR1

AU004403

chr1:
72258285-72258285

A

C

intronic

De novo

-

Trost2022 G

NEGR1

1-1161-003

chr1:
72192641-72192641

T

C

intronic

De novo

-

Trost2022 G

NEGR1

5-1001-003

chr1:
72181645-72181645

A

G

intronic

De novo

-

Trost2022 G

NEGR1

AU059003

chr1:
72246772-72246772

A

G

intronic

De novo

-

Trost2022 G

NEGR1

7-0095-004

chr1:
71721810-71721810

G

C

intergenic

De novo

-

Yuen2017 G

NEGR1

AU3777302

chr1:
73631632-73631632

C

G

intergenic

De novo

-

Yuen2017 G

NEGR1

MT_22.3

chr1:
72227778-72227778

G

T

intronic

De novo

-

Trost2022 G

NEGR1

1-0051-005

chr1:
72419020-72419028

ATAACTAGA

TC

intronic

De novo

-

Trost2022 G

NEGR1

2-1277-003

chr1:
72638813-72638813

A

C

intronic

De novo

-

Yuen2017 G

NEGR1

3-0659-000

chr1:
72407510-72407510

G

A

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00438-003

chr1:
72448228-72448228

A

T

intronic

De novo

-

Trost2022 G

NEGR1

1-0051-004

chr1:
72419020-72419028

ATAACTAGA

TC

intronic

De novo

-

Trost2022 G

NEGR1

2-1635-004

chr1:
72638864-72638864

A

T

intronic

De novo

-

Yuen2017 G

NEGR1

MT_67.3

chr1:
72377792-72377792

G

A

intronic

De novo

-

Trost2022 G

NEGR1

AU072905

chr1:
73624458-73624458

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

1-0067-004

chr1:
72517892-72517893

GG

CAC

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00329-004

chr1:
72498755-72498755

C

T

intronic

De novo

-

Trost2022 G

NEGR1

7-0311-003

chr1:
72534617-72534617

A

T

intronic

De novo

-

Trost2022 G

NEGR1

1-0067-004

chr1:
72517896-72517897

GA

TC

intronic

De novo

-

Trost2022 G

NEGR1

3-0772-000

chr1:
72470465-72470465

T

C

intronic

De novo

-

Trost2022 G

NEGR1

2-1690-003

chr1:
71763310-71763310

G

T

intergenic

De novo

-

Yuen2017 G

NEGR1

5-0009-003

chr1:
72461879-72461879

A

G

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00353-004

chr1:
72497769-72497769

C

T

intronic

De novo

-

Trost2022 G

NEGR1

7-0292-003A

chr1:
72487988-72487988

G

A

intronic

De novo

-

Trost2022 G

NEGR1

1-0272-004

chr1:
72638729-72638729

A

G

intronic

De novo

-

Trost2022 G

NEGR1

2-0296-003

chr1:
72638729-72638729

A

G

intronic

De novo

-

Trost2022 G

NEGR1

2-0296-003

chr1:
72638744-72638744

T

C

intronic

De novo

-

Trost2022 G

NEGR1

1-0147-003

chr1:
72638744-72638744

T

C

intronic

De novo

-

Trost2022 G

NEGR1

AU2320301

chr1:
72622410-72622410

A

G

intronic

De novo

-

Trost2022 G

NEGR1

MSSNG00010-003

chr1:
72555197-72555197

A

G

intronic

De novo

-

Trost2022 G

NEGR1

AU3371301

chr1:
72954693-72954693

T

C

intergenic

De novo

-

Yuen2017 G

NEGR1

2-0273-003

chr1:
72638721-72638724

ATTT

GCTC

intronic

De novo

-

Trost2022 G

NEGR1

2-0273-003

chr1:
72638713-72638715

AGG

GGA

intronic

De novo

-

Trost2022 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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