Variant Results

or

Results for "LINGO2"

Variant Events: 120

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

LINGO2

1-0191-003

chr9:
28217652-28217652

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

2-0063-005

chr9:
28409950-28409950

C

G

intronic

De novo

-

Yuen2017 G

LINGO2

5-0040-003

chr9:
30359106-30359106

T

G

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1195-003

chr9:
28681579-28681579

C

T

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU4211304

chr9:
28559769-28559769

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

2-0028-003

chr9:
28066117-28066117

G

A

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

2-1153-003

chr9:
29893340-29893340

C

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU3997302

chr9:
30283633-30283633

G

C

intergenic

De novo

-

Yuen2017 G

LINGO2

7-0249-004

chr9:
29470879-29470879

T

A

intergenic

De novo

-

Yuen2017 G

LINGO2

AU0146301

chr9:
29535496-29535496

A

T

intergenic

De novo

-

Yuen2017 G

LINGO2

60-2027

chr9:
29063462-29063462

G

A

intronic

Inherited

-

Michaelson2012 G

LINGO2

74-0117

chr9:
29256361-29256361

T

C

intergenic

De novo

-

Michaelson2012 G

LINGO2

AU2248302

chr9:
28494874-28494874

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

74-0117

chr9:
28359591-28359591

A

T

intronic

De novo

-

Michaelson2012 G

LINGO2

63-449

chr9:
28949138-28949138

C

T

intronic

De novo

-

Michaelson2012 G

LINGO2

1-0368-004

chr9:
30365317-30365317

G

T

intergenic

De novo

-

Yuen2017 G

LINGO2

74-0355

chr9:
30288864-30288864

T

C

intergenic

De novo

-

Michaelson2012 G

LINGO2

AU4473301

chr9:
30166101-30166101

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

AU005214

chr9:
28429929-28429929

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

2-0210-005

chr9:
29363270-29363270

C

G

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1690-003

chr9:
29163018-29163018

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

AU076508

chr9:
28799543-28799543

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU1223301

chr9:
29395203-29395203

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0162-004

chr9:
28171893-28171893

C

G

intronic

De novo

-

Yuen2017 G

LINGO2

1-0571-003

chr9:
30129805-30129813

CTTTTTTTT

CTTTTTTT

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0200-004

chr9:
29397792-29397792

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

3-0140-000

chr9:
30066231-30066231

T

A

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0862-003

chr9:
30272664-30272664

A

G

intergenic

De novo

-

Yuen2017 G

LINGO2

AU3794301

chr9:
28541619-28541619

G

A

intronic

De novo

-

Yuen2017 G

LINGO2

1-0382-003

chr9:
30166062-30166062

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

2-0116-004

chr9:
29638100-29638100

A

G

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1177-003

chr9:
29340608-29340631

TTTTGTTTGTTTGTTTGTTTGTTT

TTTTGTTTGTTTGTTTGTTT

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0455-004

chr9:
28731447-28731447

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU1640302

chr9:
29884558-29884558

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0455-004

chr9:
28680740-28680740

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

1-0338-005

chr9:
28100810-28100810

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

AU4032306

chr9:
29903205-29903205

G

T

intergenic

De novo

-

Yuen2017 G

LINGO2

AU2123301

chr9:
28639183-28639183

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

AU2123301

chr9:
28671232-28671232

G

A

intronic

De novo

-

Yuen2017 G

LINGO2

2-0007-004

chr9:
28127469-28127469

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

2-1441-003

chr9:
28649156-28649156

C

A

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

1-0565-004

chr9:
29202391-29202391

T

TTAA

intronic

De novo

-

Yuen2017 G

LINGO2

AU4237304

chr9:
28829763-28829763

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

2-1094-004

chr9:
29886376-29886376

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1454-003

chr9:
29754841-29754841

A

T

intergenic

De novo

-

Yuen2017 G

LINGO2

AU4284301

chr9:
29545722-29545725

TACA

TA

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0701-003

chr9:
28133236-28133236

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

2-0002-005

chr9:
29312542-29312542

A

C

intergenic

De novo

-

Yuen2017 G

LINGO2

AU000704

chr9:
28289241-28289241

C

G

intronic

De novo

-

Yuen2017 G

LINGO2

1-0569-003

chr9:
29700135-29700135

C

A

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1375-003

chr9:
28995517-28995517

G

C

intronic

De novo

-

Yuen2017 G

LINGO2

2-0503-003

chr9:
30224431-30224431

A

G

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0560-003

chr9:
29020136-29020136

A

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU3263302

chr9:
29026735-29026735

G

A

intronic

De novo

-

Yuen2017 G

LINGO2

AU071703

chr9:
28366049-28366049

A

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU0636303

chr9:
29779914-29779923

TTTCTGTTCT

TTTCT

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0051-004

chr9:
30188549-30188550

TA

T

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1264-003

chr9:
30139082-30139097

CTGTGTGTGTGTGTGT

CTGTGTGTGTGTGT

intergenic

De novo

-

Yuen2017 G

LINGO2

2-0135-004

chr9:
28764072-28764072

A

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU3906301

chr9:
28283509-28283509

G

C

intronic

De novo

-

Yuen2017 G

LINGO2

2-0070-003

chr9:
28899580-28899580

G

T

intronic

De novo

-

Yuen2017 G

LINGO2

AU4467302

chr9:
29662066-29662066

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0184-003

chr9:
30123305-30123305

G

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0552-003

chr9:
29429316-29429316

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

5-0018-003

chr9:
29648658-29648662

TAAAC

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0863-003

chr9:
28640063-28640063

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

AU2410302

chr9:
29801362-29801363

TA

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0651-003

chr9:
30317562-30317562

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1213-003

chr9:
29548758-29548758

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1510-003

chr9:
30357050-30357050

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

AU065807

chr9:
28075340-28075340

G

A

intronic

De novo

-

Yuen2017 G

LINGO2

AU3506302

chr9:
29689993-29689993

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0403-004

chr9:
29361745-29361745

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0591-003

chr9:
30303858-30303858

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1345-003

chr9:
28051878-28051878

G

C

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

1-0564-003

chr9:
28212987-28212987

T

G

intronic

De novo

-

Yuen2017 G

LINGO2

2-0202-003

chr9:
29595372-29595372

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

AU2793301

chr9:
29037862-29037862

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

2-1244-003

chr9:
28945384-28945384

A

G

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU025704

chr9:
28371535-28371535

C

G

intronic

De novo

-

Yuen2017 G

LINGO2

AU3779302

chr9:
28977276-28977276

C

T

intronic

De novo

-

Yuen2017 G

LINGO2

2-1451-003

chr9:
29175956-29175956

G

C

intronic

De novo

-

Yuen2017 G

LINGO2

1-0467-003

chr9:
29467752-29467752

G

C

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1173-003

chr9:
30196080-30196080

A

G

intergenic

De novo

-

Yuen2017 G

LINGO2

SP0034714

chr9:
27949836-27949836

A

G

exonic

De novo

synonymous SNV

NM_001258282
NM_152570

c.T834C
c.T834C

p.L278L
p.L278L

-

Feliciano2019 E

LINGO2

1-0524-003

chr9:
30092404-30092410

GACAGAT

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU4327303

chr9:
30368435-30368437

TGA

TGAAGA

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0010-005

chr9:
28231611-28231611

C

G

intronic

De novo

-

Yuen2017 G

LINGO2

2-1152-003

chr9:
28108619-28108619

C

T

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

2-0127-004

chr9:
28614227-28614227

T

A

intronic

De novo

-

Yuen2017 G

LINGO2

2-1315-003

chr9:
28387482-28387482

T

C

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU073005

chr9:
29139788-29139788

G

T

intronic

De novo

-

Yuen2017 G

LINGO2

AU011704

chr9:
29256361-29256361

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

A17

chr9:
30077919-30077919

A

G

intergenic

De novo

-

Wu2018 G

LINGO2

AU011704

chr9:
28359591-28359591

A

T

intronic

De novo

-

Yuen2017 G

LINGO2

AU3646301

chr9:
29484933-29484942

CTTTAGTTTA

CTTTA

intergenic

De novo

-

Yuen2017 G

LINGO2

AU4089301

chr9:
28126941-28126941

C

A

intronic

De novo

-

Yuen2017 G

LINGO2

1-0180-004

chr9:
28235048-28235048

G

A

intronic

De novo

-

Yuen2017 G

LINGO2

2-0503-004

chr9:
30224431-30224431

A

G

intergenic

De novo

-

Yuen2017 G

LINGO2

7-0001-003

chr9:
29710563-29710563

G

A

intergenic

De novo

-

Yuen2017 G

LINGO2

3-0438-000

chr9:
28636289-28636291

CAT

C

intronic

De novo

-

Yuen2016 G

LINGO2

13171.p1

chr9:
28142301-28142301

A

G

intronic

De novo

-

Turner2016 G

LINGO2

1-0973-003

chr9:
29933186-29933186

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0354-003

chr9:
28560994-28560994

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

1-0973-003

chr9:
29154712-29154712

G

C

intronic

De novo

-

Yuen2017 G

LINGO2

14153.p1

chr9:
29706081-29706081

T

C

intergenic

De novo

-

Turner2016 G

LINGO2

13393.p1

chr9:
30259585-30259585

C

A

intergenic

De novo

-

Turner2016 G

LINGO2

13023.p1

chr9:
28725582-28725582

G

A

intronic

De novo

-

Turner2016 G

LINGO2

13171.p1

chr9:
28821750-28821750

G

A

intronic

De novo

-

Turner2016 G

LINGO2

2-1375-003

chr9:
28989797-28989797

T

C

intronic

De novo

-

Yuen2016 G
Yuen2017 G

LINGO2

AU3889305

chr9:
28993158-28993158

A

G

intronic

De novo

-

Yuen2017 G

LINGO2

5-0123-003

chr9:
30174507-30174507

A

T

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0565-003

chr9:
29202391-29202391

T

TTAA

intronic

De novo

-

Yuen2017 G

LINGO2

2-1529-003

chr9:
29346097-29346097

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1529-003

chr9:
29207131-29207144

AATATATATATATA

AATATATATATA

intronic

De novo

-

Yuen2017 G

LINGO2

AU4054301

chr9:
29462173-29462173

T

C

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0486-003

chr9:
29290331-29290331

C

T

intergenic

De novo

-

Yuen2017 G

LINGO2

2-1280-003

chr9:
29535581-29535596

AACACACACACACACA

AACACACACACACA

intergenic

De novo

-

Yuen2017 G

LINGO2

1-0652-003

chr9:
28976920-28976920

T

C

intronic

De novo

-

Yuen2017 G

LINGO2

AU002406

chr9:
28672255-28672255

C

T

intronic

De novo

-

Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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