Variant Results

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Results for "MSH4"

Variant Events: 10

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
MSH4	1-0332-003	chr1: 76309489-76309489	A	T	intronic		De novo					-	-	Trost2022 G Yuen2017 G
MSH4	2-1153-003	chr1: 76323097-76323097	T	C	intronic		De novo					-	-	Trost2022 G Yuen2016 G Yuen2017 G
MSH4	5-5021-003	chr1: 76354296-76354296	T	TG	intronic		De novo					-	-	Trost2022 G
MSH4	1-0394-003	chr1: 76325796-76325796	G	T	intronic		De novo					-	-	Trost2022 G
MSH4	AU4054302	chr1: 76273544-76273544	T	G	intronic		De novo					-	-	Trost2022 G Yuen2017 G
MSH4	08C78798	chr1: 76282194-76282195	CA	C	exonic		De novo	frameshift deletion	NM_002440	c.953delA	p.Q318fs	-	-	DeRubeis2014 E Fu2022 E Kosmicki2017 E Satterstrom2020 E Trost2022 G Zhou2022 GE
MSH4	SP0104807	chr1: 76262961-76262961	C	T	intronic		De novo					-	-	Fu2022 E Trost2022 G
MSH4	mAGRE4126	chr1: 76378399-76378401	CCT	C	exonic		Paternal	frameshift deletion	NM_002440	c.2639_2640del	p.P880fs	-	-	Cirnigliaro2023 G
MSH4	7-0273-003	chr1: 76331047-76331047	T	C	intronic		De novo					-	-	Trost2022 G Yuen2017 G
MSH4	MSSNG00038-003	chr1: 76360769-76360769	A	C	intronic		De novo					-	-	Trost2022 G

Source Variant Information

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Paper Information

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Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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