Variant Results

or

Results for "LINC00564"

Variant Events: 164

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

LINC00564

1-0433-003

chr13:
82816098-82816098

G

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU2951303

chr13:
83342755-83342755

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3811301

chr13:
83836126-83836126

A

T

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1297-004

chr13:
82289347-82289347

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3874302

chr13:
83862253-83862253

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU061104

chr13:
83394920-83394920

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1635-004

chr13:
81897431-81897431

T

G

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0197-004

chr13:
83021311-83021311

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0377-003

chr13:
82136805-82136805

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0533-003

chr13:
82125504-82125504

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU011021

Complex Event; expand row to view variants

De novo

-

Yuen2017 G
Yuen2017 G

LINC00564

AU4336301

chr13:
82764583-82764583

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4496301

chr13:
83796717-83796717

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

7-0151-003

chr13:
82706904-82706904

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU046708

chr13:
83052916-83052916

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

5-0055-003

chr13:
82193922-82193922

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

7-0223-003

chr13:
83455798-83455798

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0049-004

chr13:
83081860-83081860

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4024303

chr13:
82619273-82619273

T

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU2458303

chr13:
83822887-83822887

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3891302

chr13:
82322696-82322696

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0107-003

chr13:
82585684-82585684

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

5-0025-003

chr13:
82815157-82815157

A

T

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0158-003

chr13:
83508699-83508699

A

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU050604

chr13:
82339550-82339550

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

5-0050-004

chr13:
83082608-83082608

C

CAATGTTTTTACTTAAATACAAATACCATTGT

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0487-003

chr13:
81806741-81806741

C

G

intergenic

De novo

-

Yuen2016 G

LINC00564

2-1255-003

chr13:
82248572-82248572

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0325-003

chr13:
82591914-82591914

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0571-003

chr13:
83451245-83451245

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1288-003

chr13:
83267057-83267057

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

74-0352

chr13:
82415376-82415376

C

T

intergenic

De novo

-

Michaelson2012 G

LINC00564

2-1431-003

chr13:
83829759-83829759

T

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

1-0433-004

chr13:
82927270-82927270

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4122301

chr13:
81901024-81901024

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0214-003

chr13:
82619603-82619603

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU038204

chr13:
82880747-82880747

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0820-003

chr13:
82156791-82156791

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0289-003

chr13:
81839500-81839500

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU2123301

chr13:
82686198-82686198

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1346-003

chr13:
83401449-83401449

T

C

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

AU4067303

chr13:
83604156-83604156

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0488-003

chr13:
82366750-82366750

G

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4164301

Complex Event; expand row to view variants

De novo

-

Yuen2017 G
Yuen2017 G

LINC00564

1-0569-003

chr13:
82246694-82246694

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0541-004

chr13:
82541896-82541897

AT

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0554-003

chr13:
82718283-82718283

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3761301

chr13:
82526027-82526027

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0569-003

chr13:
83379945-83379945

G

T

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0198-003

chr13:
82685235-82685235

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU2129303

chr13:
82688386-82688386

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

7-0242-003

chr13:
83244033-83244041

TAAAAAAAA

TAAAAAAA

intergenic

De novo

-

Yuen2017 G

LINC00564

12011.p1

chr13:
83338915-83338915

A

T

intergenic

De novo

-

Turner2016 G

LINC00564

2-0013-003

chr13:
82542030-82542030

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU031404

chr13:
83588278-83588278

A

C

intergenic

De novo

-

Yuen2017 G

LINC00564

12011.p1

chr13:
83338917-83338917

A

T

intergenic

De novo

-

Turner2016 G

LINC00564

AU3636302

chr13:
83667415-83667415

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0057-004

chr13:
81892722-81892722

G

T

intergenic

De novo

-

Yuen2017 G

LINC00564

5-0065-003

chr13:
83112516-83112516

A

C

intergenic

De novo

-

Yuen2017 G

LINC00564

5-0148-003

chr13:
83882795-83882795

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0028-003

chr13:
83747740-83747740

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU2951302

chr13:
83342755-83342755

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

7-0250-003

chr13:
82652757-82652757

T

TA

intergenic

De novo

-

Yuen2017 G

LINC00564

AU060403

chr13:
83782521-83782521

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

7-0127-003

chr13:
83047368-83047368

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-17333-blood-wgs-ILLUMINA

chr13:
82040400-82040400

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-17693-blood-wgs-ILLUMINA

chr13:
82003612-82003612

T

A

intergenic

De novo

-

Kim2024 G

LINC00564

2-0309-005

chr13:
82506974-82506974

G

GA

intergenic

De novo

-

Yuen2017 G

LINC00564

AU021204

chr13:
83211876-83211876

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-10233-blood-wgs-ILLUMINA

chr13:
81935678-81935678

C

T

intergenic

De novo

-

Kim2024 G

LINC00564

AU021204

chr13:
83370764-83370764

C

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-32873-blood-wgs-ILLUMINA

chr13:
81850559-81850559

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

1-0567-004

chr13:
83500564-83500564

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU006804

chr13:
83259668-83259668

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-30353-blood-wgs-ILLUMINA

chr13:
82341102-82341102

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-13453-blood-wgs-ILLUMINA

chr13:
82227857-82227857

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-7373-blood-wgs-ILLUMINA

chr13:
82188786-82188786

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

2-0264-004

chr13:
82936930-82936930

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-29573-blood-wgs-ILLUMINA

chr13:
82166919-82166919

C

G

intergenic

De novo

-

Kim2024 G

LINC00564

AU4015302

chr13:
83665757-83665757

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-17803-blood-wgs-ILLUMINA

chr13:
82142897-82142897

A

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-9533-blood-wgs-ILLUMINA

chr13:
82139209-82139209

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-19933-blood-wgs-ILLUMINA

chr13:
82120129-82120129

C

T

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-16223-blood-wgs-ILLUMINA

chr13:
82115380-82115380

C

G

intergenic

De novo

-

Kim2024 G

LINC00564

7-0161-003

chr13:
82188970-82188970

G

C

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-19023-blood-wgs-ILLUMINA

chr13:
82757542-82757542

G

T

intergenic

De novo

-

Kim2024 G

LINC00564

AU043804

chr13:
83529249-83529249

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-29923-blood-wgs-ILLUMINA

chr13:
82745026-82745026

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-17933-blood-wgs-ILLUMINA

chr13:
82690178-82690182

GTTTA

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-10313-blood-wgs-ILLUMINA

chr13:
82547735-82547735

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

2-0202-003

chr13:
82593820-82593820

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-19333-blood-wgs-ILLUMINA

chr13:
82496315-82496315

A

T

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-19753-blood-wgs-ILLUMINA

chr13:
82485246-82485246

C

CCTGAGGTGTATGGTGACCGTCTCAAAAAAAAAAAAAAAA

intergenic

De novo

-

Kim2024 G

LINC00564

1-0277-003

chr13:
83772576-83772593

ATGTGTGTGTGTGTGTGT

ATGTGTGTGTGTGTGT

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-29523-blood-wgs-ILLUMINA

chr13:
82469662-82469662

T

G

intergenic

De novo

-

Kim2024 G

LINC00564

AU4188302

chr13:
83121536-83121536

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-29813-blood-wgs-ILLUMINA

chr13:
82434953-82434953

G

A

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-18243-blood-wgs-ILLUMINA

chr13:
83191431-83191431

C

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-30193-blood-wgs-ILLUMINA

chr13:
83176946-83176948

CTT

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-4933-blood-wgs-ILLUMINA

chr13:
83102126-83102126

C

T

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-17933-blood-wgs-ILLUMINA

chr13:
83044259-83044259

C

T

intergenic

De novo

-

Kim2024 G

LINC00564

AU3997301

chr13:
82572421-82572421

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-17493-blood-wgs-ILLUMINA

chr13:
83013687-83013687

C

A

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-18993-blood-wgs-ILLUMINA

chr13:
83006909-83006909

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-18603-blood-wgs-ILLUMINA

chr13:
82963483-82963483

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

1-0452-003

chr13:
82674149-82674149

C

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

7-0024-003

chr13:
83730347-83730347

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-29753-blood-wgs-ILLUMINA

chr13:
82828080-82828080

A

T

intergenic

De novo

-

Kim2024 G

LINC00564

1-0104-003

chr13:
81968786-81968786

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-16293-blood-wgs-ILLUMINA

chr13:
83546179-83546179

G

GTAGC

intergenic

De novo

-

Kim2024 G

LINC00564

2-1254-003

chr13:
82669321-82669321

G

C

intergenic

De novo

-

Yuen2016 G

LINC00564

IBS-ASD-19973-blood-wgs-ILLUMINA

chr13:
83506158-83506158

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-29643-blood-wgs-ILLUMINA

chr13:
83383927-83383927

G

C

intergenic

De novo

-

Kim2024 G

LINC00564

1-0826-003

chr13:
83366871-83366871

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-12743-blood-wgs-ILLUMINA

chr13:
83368866-83368866

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-7283-blood-wgs-ILLUMINA

chr13:
83349057-83349057

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-19603-blood-wgs-ILLUMINA

chr13:
83347359-83347359

A

G

intergenic

De novo

-

Kim2024 G

LINC00564

7-0078-003

chr13:
83160226-83160226

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-17133-blood-wgs-ILLUMINA

chr13:
83256027-83256027

A

C

intergenic

De novo

-

Kim2024 G

LINC00564

A20

chr13:
81935827-81935827

G

A

intergenic

De novo

-

Wu2018 G

LINC00564

IBS-ASD-17733-blood-wgs-ILLUMINA

chr13:
83254814-83254814

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

2-1328-003

chr13:
83558674-83558674

T

C

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

AU063004

chr13:
83767350-83767350

A

G

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-13313-blood-wgs-ILLUMINA

chr13:
83872312-83872312

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

5-0111-003

chr13:
83867583-83867583

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3862305

chr13:
83603047-83603047

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-32793-blood-wgs-ILLUMINA

chr13:
83850973-83850973

C

T

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-12963-blood-wgs-ILLUMINA

chr13:
83771571-83771571

G

T

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-18793-blood-wgs-ILLUMINA

chr13:
83769713-83769713

C

G

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-9513-blood-wgs-ILLUMINA

chr13:
83688657-83688657

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

2-1306-004

chr13:
83370286-83370286

C

CAA

intergenic

De novo

-

Yuen2017 G

LINC00564

IBS-ASD-18673-blood-wgs-ILLUMINA

chr13:
83677906-83677906

T

A

intergenic

De novo

-

Kim2024 G

LINC00564

IBS-ASD-18433-blood-wgs-ILLUMINA

chr13:
83578674-83578674

T

C

intergenic

De novo

-

Kim2024 G

LINC00564

1-0508-003

chr13:
82182930-82182930

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0323-004

chr13:
82100371-82100371

T

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4310301

chr13:
83266551-83266551

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0145-004

chr13:
83471795-83471806

TTGGGGCGTGAA

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU057404

chr13:
82990933-82990933

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1089-003

chr13:
83771992-83771995

TGGG

T

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1366-003

chr13:
83607028-83607028

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0203-004

chr13:
82661528-82661528

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU1848302

chr13:
83170506-83170506

C

G

intergenic

De novo

-

Yuen2017 G

LINC00564

AU1698301

chr13:
81919118-81919118

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1689-003

chr13:
82945778-82945778

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU047703

chr13:
83655414-83655414

A

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU053503

chr13:
82317576-82317576

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1402-003

chr13:
83298365-83298365

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1085-004

chr13:
81919696-81919696

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4237301

chr13:
82627138-82627138

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0531-003

chr13:
82406739-82406739

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3839303

chr13:
82041616-82041616

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

AU4237301

chr13:
82627380-82627380

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0270-003

chr13:
82977036-82977036

A

T

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3903301

chr13:
81889577-81889577

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-1269-003

chr13:
82448457-82448457

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC00564

AU4013303

chr13:
83251335-83251335

G

A

intergenic

De novo

-

Yuen2017 G

LINC00564

2-0295-004

chr13:
82203962-82203962

T

A

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0299-003

chr13:
83102641-83102641

C

T

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0393-003

chr13:
83293926-83293926

G

C

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0161-004

chr13:
83697946-83697946

T

C

intergenic

De novo

-

Yuen2017 G

LINC00564

AU050910

chr13:
83719675-83719678

CATA

CA

intergenic

De novo

-

Yuen2017 G

LINC00564

AU3371305

chr13:
81893204-81893204

G

T

intergenic

De novo

-

Yuen2017 G

LINC00564

1-0372-003

chr13:
82997071-82997071

A

G

intergenic

De novo

-

Yuen2016 G

LINC00564

1-0246-005

chr13:
82899572-82899572

G

A

intergenic

De novo

-

Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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