Variant Results

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Results for "NLGN2"

Variant Events: 6

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
NLGN2	PN400584	chr17: 7319124-7319124	C	T	exonic		De novo	synonymous SNV	NM_020795	c.C1332T	p.G444G	-	6.0E-4	Leblond2019 E
NLGN2	13367.p1	chr17: 7318418-7318418	C	T	exonic		De novo	nonsynonymous SNV	NM_020795	c.C988T	p.R330C	16.84	-	Ji2016 E Krumm2015 E Satterstrom2020 E Trost2022 G Zhou2022 GE
NLGN2	G01-GEA-184-HI	chr17: 7320566-7320566	G	T	exonic		De novo	nonsynonymous SNV	NM_020795	c.G1956T	p.E652D	6.422	-	Fu2022 E Lim2017 E
NLGN2	13367_p1	chr17: 7318418-7318418	C	T	exonic		De novo	nonsynonymous SNV	NM_020795	c.C988T	p.R330C	16.84	-	Fu2022 E
NLGN2	10C107685	chr17: 7319134-7319134	C	T	exonic		De novo	nonsynonymous SNV	NM_020795	c.C1342T	p.R448C	15.93	-	DeRubeis2014 E Fu2022 E Kosmicki2017 E Lim2017 E Satterstrom2020 E Trost2022 G Zhou2022 GE
NLGN2	SP0095463	chr17: 7318333-7318333	C	T	exonic		De novo	synonymous SNV	NM_020795	c.C903T	p.N301N	-	-	Fu2022 E Trost2022 G Zhou2022 GE

Source Variant Information

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Paper Information

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Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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