Variant Results

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Results for "STAG3"

Variant Events: 10

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
STAG3	SP0024724	chr7: 99792958-99792958	G	A	exonic		De novo	synonymous SNV	NM_001282718 NM_001282716 NM_001282717 NM_012447	c.G720A c.G894A c.G894A c.G894A	p.E240E p.E298E p.E298E p.E298E	-	8.241E-6	Fu2022 E Trost2022 G Zhou2022 GE
STAG3	3-0295-000	chr7: 99786842-99786842	A	G	intronic		De novo					-	-	Trost2022 G
STAG3	SP0003812	chr7: 99779653-99779653	A	G	intronic		De novo					-	-	Fu2022 E
STAG3	1-0590-003	chr7: 99777356-99777374	CTTATTTATTTATTTATTT	CTTATTTATTTATTT	intronic		De novo					-	-	Yuen2017 G
STAG3	mAGRE1401	chr7: 99801719-99801719	C	T	exonic		Paternal	stopgain	NM_001282718 NM_001282716 NM_001282717 NM_012447	c.C2602T c.C2776T c.C2776T c.C2776T	p.R868X p.R926X p.R926X p.R926X	43.0	3.295E-5	Cirnigliaro2023 G
STAG3	iHART1401	chr7: 99801719-99801719	C	T	exonic		Paternal	stopgain	NM_001282718 NM_001282716 NM_001282717 NM_012447	c.C2602T c.C2776T c.C2776T c.C2776T	p.R868X p.R926X p.R926X p.R926X	43.0	3.295E-5	Ruzzo2019 G
STAG3	14405.p1	chr7: 99802722-99802722	T	C	exonic		De novo	nonsynonymous SNV	NM_001282718 NM_001282716 NM_001282717 NM_012447	c.T2872C c.T3046C c.T3046C c.T3046C	p.S958P p.S1016P p.S1016P p.S1016P	19.97	1.648E-5	Iossifov2014 E Ji2016 E Kosmicki2017 E Satterstrom2020 E Wilfert2021 G Zhou2022 GE
STAG3	TRE_2633	chr7: 99779772-99779772	A	G	exonic		De novo	nonsynonymous SNV	NM_001282716 NM_001282717 NM_001282718 NM_012447	c.A176G c.A176G c.A176G c.A176G	p.N59S p.N59S p.N59S p.N59S	0.076	-	Fu2022 E
STAG3	36162	chr7: 99802722-99802722	T	C	exonic		De novo	nonsynonymous SNV	NM_001282718 NM_001282716 NM_001282717 NM_012447	c.T2872C c.T3046C c.T3046C c.T3046C	p.S958P p.S1016P p.S1016P p.S1016P	19.97	1.648E-5	Fu2022 E Trost2022 G
STAG3	2-1194-003	chr7: 99779292-99779292	C	T	intronic		De novo					-	-	Trost2022 G Yuen2016 G Yuen2017 G

Source Variant Information

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Paper Information

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Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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