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Results for "SOX2-OT"

Variant Events: 30

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
SOX2-OT   AU2433303chr3:
181308447-181308447
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU2988302chr3:
181396246-181396246
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   5-0146-003chr3:
180857101-180857101
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   2-0145-004chr3:
181404066-181404066
GCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   11561.p1chr3:
181429031-181429031
TCncRNA_intronicDe novo--Wilfert2021 G
SOX2-OT   AU075210chr3:
181021454-181021460
ATTTTTTATTTTTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   2-0306-004chr3:
181385331-181385331
ATncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   3-0458-000Achr3:
181366392-181366392
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU2988303chr3:
181396246-181396246
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   3-0065-000chr3:
180777805-180777805
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU065304chr3:
181301003-181301015
GATAATAATAATAGATAATAATAncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU012804chr3:
180921357-180921357
AGncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   2-1290-004chr3:
180997299-180997299
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-1000-003chr3:
180941258-180941258
GTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU045010chr3:
181241932-181241932
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-0433-004chr3:
181111280-181111280
ACncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   3-0458-000Bchr3:
181366392-181366392
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   2-1605-003chr3:
180784987-180784987
CCTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU031204chr3:
180858646-180858647
ATATTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-0998-003chr3:
181389421-181389421
AGncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU031204chr3:
181450765-181450765
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU1404302chr3:
181321620-181321620
AGncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   11432.p1chr3:
181206955-181206955
TTAncRNA_intronicUnknown--Werling2018 G
SOX2-OT   2-1370-003chr3:
181025295-181025295
CGncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU2023302chr3:
181034170-181034170
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-0139-005chr3:
181254883-181254883
CTncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-0547-003chr3:
181244957-181244971
TGAGAGAGAGAGAGATGAGAGAGAGAGAncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU3777302chr3:
181216460-181216460
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   AU2787302chr3:
181280737-181280737
TCncRNA_intronicDe novo--Yuen2017 G
SOX2-OT   1-0252-003chr3:
180814843-180814843
CTncRNA_intronicDe novo--Yuen2017 G
Source Variant Information

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Source:

Paper alias:

No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notesView
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