Variant Results

or

Results for "LINC01139"

Variant Events: 72

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

LINC01139

1-0403-004

chr1:
239536585-239536585

T

A

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1306-004

chr1:
238757084-238757084

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0481-003

chr1:
238838138-238838138

G

GTGGTT

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1620-004

chr1:
238862245-238862245

G

C

intergenic

De novo

-

Yuen2017 G

LINC01139

AU025704

chr1:
239505900-239505900

G

C

intergenic

De novo

-

Yuen2017 G

LINC01139

13143.p1

chr1:
239763335-239763338

CCTT

C

intergenic

De novo

-

Wilfert2021 G

LINC01139

AU1355301

chr1:
239216906-239216906

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0436-003

chr1:
239130146-239130146

C

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU2863302

chr1:
239083525-239083525

A

T

intergenic

De novo

-

Yuen2017 G

LINC01139

5-0014-003

chr1:
238733404-238733404

T

A

intergenic

De novo

-

Yuen2017 G

LINC01139

AU3397302

chr1:
239709056-239709063

ATTTTTTT

ATTTTTT

intergenic

De novo

-

Yuen2017 G

LINC01139

2-0286-004

chr1:
238981652-238981655

TTTC

T

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4444304

chr1:
239068364-239068364

A

G

intergenic

De novo

-

Yuen2017 G

LINC01139

AU1223301

chr1:
239085234-239085238

CTTTT

CTTT

intergenic

De novo

-

Yuen2017 G

LINC01139

AU2075301

chr1:
239462510-239462521

TACACACACACA

TACACACACA

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0381-003

chr1:
238847968-238847968

C

T

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1292-004

chr1:
239703662-239703662

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1425-003

chr1:
239271859-239271859

A

T

intergenic

De novo

-

Yuen2017 G

LINC01139

AU2793303

chr1:
239604634-239604634

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0067-004

chr1:
239278763-239278763

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1306-003

chr1:
238757084-238757084

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0627-006

chr1:
238814536-238814536

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

AU3913303

chr1:
238784554-238784554

G

T

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0652-004

chr1:
239573741-239573741

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0490-003

chr1:
239008028-239008028

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1183-003

chr1:
238742485-238742485

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

AU2000305

chr1:
239079969-239079969

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

2-0223-003

chr1:
238673255-238673255

T

TATC

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0446-003

chr1:
239578963-239578967

TAATA

T

intergenic

De novo

-

Yuen2017 G

LINC01139

A20

chr1:
238993596-238993596

C

T

intergenic

De novo

-

Wu2018 G

LINC01139

AU056804

chr1:
239238110-239238110

T

C

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4164301

chr1:
239097297-239097297

A

G

intergenic

De novo

-

Yuen2017 G

LINC01139

2-0305-004

chr1:
238995947-238995947

G

T

intergenic

De novo

-

Yuen2017 G

LINC01139

7-0055-003

chr1:
239436960-239436960

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0175-004

chr1:
238703167-238703167

G

T

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1313-003

chr1:
238991574-238991574

C

T

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

2-1266-003

chr1:
238878800-238878800

G

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU3586303

chr1:
238883037-238883037

A

T

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1292-003

chr1:
239271863-239271863

C

T

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0487-003

chr1:
239180341-239180341

C

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU3721302

chr1:
238990660-238990660

C

G

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1105-003

chr1:
239554979-239554979

G

T

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

2-1305-003

chr1:
238823300-238823300

T

C

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU3891303

chr1:
239170354-239170354

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

2-0028-003

chr1:
239408706-239408706

T

A

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

2-1085-003

chr1:
239128209-239128209

C

T

intergenic

De novo

-

Yuen2017 G

LINC01139

3-0661-000

chr1:
239138083-239138085

ATT

ATTT

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4056301

chr1:
238762544-238762544

T

A

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0041-003

chr1:
239092174-239092174

T

C

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU054103

chr1:
239028186-239028186

C

G

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4176302

chr1:
239425798-239425798

C

A

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0019-004

chr1:
239270351-239270351

A

G

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0175-003

chr1:
238703167-238703167

G

T

intergenic

De novo

-

Yuen2017 G

LINC01139

AU3937301

chr1:
239078120-239078120

G

C

intergenic

De novo

-

Yuen2017 G

LINC01139

3-0456-000

chr1:
239567740-239567743

AAGA

AA

intergenic

De novo

-

Yuen2017 G

LINC01139

3-0111-000

chr1:
239609118-239609118

A

C

intergenic

De novo

-

Yuen2016 G

LINC01139

2-1176-003

chr1:
239084880-239084880

G

A

intergenic

De novo

-

Yuen2017 G

LINC01139

1-0965-003

chr1:
238711815-238711815

C

T

intergenic

De novo

-

Yuen2017 G

LINC01139

7-0249-004

chr1:
239736517-239736517

C

A

intergenic

De novo

-

Yuen2017 G

LINC01139

AU2075302

chr1:
239462510-239462521

TACACACACACA

TACACACACA

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1510-003

chr1:
238684718-238684733

TTATATATATATATAT

TTATATATATATAT

intergenic

De novo

-

Yuen2017 G

LINC01139

AU024607

chr1:
238669530-238669530

A

G

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1196-003

chr1:
239557888-239557888

G

A

intergenic

De novo

-

Yuen2016 G

LINC01139

AU0540301

chr1:
239659435-239659442

CTTTTTTT

CTTTTTT

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4264302

chr1:
239018707-239018707

A

C

intergenic

De novo

-

Yuen2017 G

LINC01139

AU2950301

chr1:
238672236-238672241

CTTTTT

CTTT

intergenic

De novo

-

Yuen2017 G

LINC01139

AU4027306

chr1:
239399765-239399765

G

C

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1093-005

chr1:
238756538-238756538

G

C

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1220-003

chr1:
239289852-239289852

T

G

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

LINC01139

AU4237302

Complex Event; expand row to view variants

De novo

-

Yuen2017 G
Yuen2017 G

LINC01139

2-0273-003

chr1:
239398618-239398618

A

C

intergenic

De novo

-

Yuen2017 G

LINC01139

2-1339-003

chr1:
239417713-239417713

T

C

intergenic

De novo

-

Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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