Variant Results

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Results for "NIT2"

Variant Events: 7

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
NIT2	133338	chr3: 100067724-100067724	C	T	exonic			nonsynonymous SNV	NM_020202	c.C583T	p.R195W	20.3	3.317E-5	Woodbury-Smith2022 E
NIT2	MSSNG00045-004	chr3: 100077549-100077549	G	A	intergenic		De novo					-	-	Trost2022 G
NIT2	mAGRE4102	chr3: 100065024-100065024	G	T	splicing		Maternal	splicing				25.6	2.492E-5	Cirnigliaro2023 G
NIT2	14363.p1	chr3: 100073605-100073605	A	G	intronic		De novo					-	-	Iossifov2014 E Kosmicki2017 E Satterstrom2020 E Trost2022 G
NIT2	MSSNG00380-003	chr3: 100059668-100059668	T	G	intronic		De novo					-	-	Trost2022 G
NIT2	AU061003	chr3: 100061794-100061794	A	G	intronic		De novo					-	-	Trost2022 G Yuen2017 G
NIT2	SJD_75.3	chr3: 100076566-100076566	C	G	intergenic		De novo					-	-	Trost2022 G

Source Variant Information

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Paper Information

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Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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