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Results for "SETBP1"

Variant Events: 71

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
SETBP1     517-05-104289chr18:
42531513-42531514
ACAexonicDe novoframeshift deletionNM_015559c.2209delCp.P737fs--Fu2022 E
Satterstrom2020 E
Trost2022 G
Zhou2022 GE
SETBP1     1-0153-005chr18:
42503911-42503911
AGintronicDe novo--Yuen2017 G
SETBP1     14012.p1chr18:
42643634-42643634
CTexonicMaternal, UnknownstopgainNM_015559c.C4762Tp.R1588X45.0-O’Roak2012a T
Wang2020 T
SETBP1     AU4103301chr18:
42765393-42765393
CTintergenicDe novo--Trost2022 G
Yuen2017 G
SETBP1     5-0129-003chr18:
42665118-42665118
CTintergenicDe novo--Yuen2017 G
SETBP1     Leuven2_85684736chr18:
42533266-42533266
CTexonicUnknownnonsynonymous SNVNM_015559c.C3961Tp.R1321C18.292.508E-5Wang2020 T
SETBP1     SAGE_523.03chr18:
42281646-42281646
GAexonicUnknownnonsynonymous SNVNM_001130110
NM_015559
c.G335A
c.G335A
p.R112Q
p.R112Q
34.0-Wang2020 T
SETBP1     Leuven_246927chr18:
42533267-42533267
GTexonicUnknownnonsynonymous SNVNM_015559c.G3962Tp.R1321L26.21.673E-5Wang2020 T
SETBP1     AU3811301chr18:
42665238-42665238
CTintergenicDe novo--Yuen2017 G
SETBP1     AU3913302chr18:
42502414-42502414
GAintronicDe novo--Trost2022 G
Yuen2017 G
SETBP1     SanDiego_R3L9Pchr18:
42533266-42533266
CTexonicUnknownnonsynonymous SNVNM_015559c.C3961Tp.R1321C18.292.508E-5Wang2020 T
SETBP1     ACGC_HN0113.p1chr18:
42530247-42530247
GGGTexonicUnknownframeshift insertionNM_015559c.942_943insGTp.L314fs--Wang2020 T
SETBP1     Radboud_10-12452chr18:
42533267-42533267
GTexonicUnknownnonsynonymous SNVNM_015559c.G3962Tp.R1321L26.21.673E-5Wang2020 T
SETBP1     7-0094-003chr18:
42276293-42276293
CTintronicDe novo--Trost2022 G
SETBP1     4-0046-004chr18:
42313181-42313181
AGintronicDe novo--Trost2022 G
SETBP1     AU2029301chr18:
42689736-42689736
AGintergenicDe novo--Yuen2017 G
SETBP1     Hu2022:54chr18:
42531731-42531731
AGexonicPaternalnonsynonymous SNVNM_015559c.A2426Gp.Q809R13.25-Hu2022 T
SETBP1     2-1315-003chr18:
42641987-42642003
TTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTGintronicDe novo--Yuen2017 G
SETBP1     5-5065-003chr18:
42370897-42370897
ATintronicDe novo--Trost2022 G
SETBP1     1-1005-005Achr18:
42390906-42390906
ATintronicDe novo--Trost2022 G
SETBP1     MSSNG00007-003Achr18:
42361668-42361668
TCintronicDe novo--Trost2022 G
SETBP1     J4K7A_01chr18:
42365959-42365959
CTintronicDe novo--Trost2022 G
SETBP1     SF0081761.p1chr18:
42532129-42532129
CTexonicnonsynonymous SNVNM_015559c.C2824Tp.R942W14.053.301E-5Wang2020 T
SETBP1     3-0833-000chr18:
42335149-42335149
ATintronicDe novo--Trost2022 G
SETBP1     PN400209chr18:
42532265-42532265
GAexonicUnknownnonsynonymous SNVNM_015559c.G2960Ap.R987Q21.98.241E-6Leblond2019 E
SETBP1     SF0056870.p1chr18:
42529892-42529892
GAexonicnonsynonymous SNVNM_015559c.G587Ap.G196D14.76-Wang2020 T
SETBP1     MSSNG00391-003chr18:
42344105-42344105
TCintronicDe novo--Trost2022 G
SETBP1     MT_48.3chr18:
42314737-42314737
CTintronicDe novo--Trost2022 G
SETBP1     MSSNG00014-003chr18:
42326292-42326292
CTintronicDe novo--Trost2022 G
SETBP1     R3L9Pchr18:
42533266-42533266
CTexonicUnknownnonsynonymous SNVNM_015559c.C3961Tp.R1321C18.292.508E-5Stessman2017 T
SETBP1     1-0153-005Achr18:
42503911-42503911
AGintronicDe novo--Trost2022 G
SETBP1     12933.p1 Complex Event; expand row to view variants  De novoframeshift insertion, frameshift substitution, nonsynonymous SNVNM_015559
NM_015559
NM_015559
NM_015559
NM_015559
c.2718dupG
c.C2717G
c.2717_2717delinsGG
c.2716_2717insGG
c.2716_2716delinsGGCCATTGG
p.P906fs
p.P906R
N/A
p.P906fs
N/A
11.58-Iossifov2014 E
Iossifov2014 E
Ji2016 E
Ji2016 E
Kosmicki2017 E
O’Roak2012b E
Satterstrom2020 E
Willsey2013 E
Zhou2022 GE
SETBP1     2-1106-004chr18:
42507630-42507630
TGintronicDe novo--Trost2022 G
SETBP1     SJD_79.3chr18:
42468304-42468304
TCintronicDe novo--Trost2022 G
SETBP1     MSSNG00067-003chr18:
42500599-42500599
GAintronicDe novo--Trost2022 G
SETBP1     160025chr18:
42532289-42532289
CTexonicDe novononsynonymous SNVNM_015559c.C2984Tp.P995L15.77-Fu2022 E
SETBP1     3-0749-000Achr18:
42453455-42453455
TAintronicDe novo--Trost2022 G
SETBP1     4899chr18:
42532020-42532020
TTGGexonicDe novoframeshift insertionNM_015559c.2715_2716insGGp.I905fs--Fu2022 E
SETBP1     3-0328-000chr18:
42466920-42466920
GAintronicDe novo--Trost2022 G
SETBP1     2-1540-003chr18:
42422753-42422753
GAintronicDe novo--Trost2022 G
SETBP1     3-0749-000Achr18:
42451697-42451697
ATintronicDe novo--Trost2022 G
SETBP1     MSSNG00346-004chr18:
42755687-42755687
ACintergenicDe novo--Trost2022 G
SETBP1     MSSNG00346-004chr18:
42756040-42756040
GAintergenicDe novo--Trost2022 G
SETBP1     M10105chr18:
42530507-42530507
GAexonicPaternalnonsynonymous SNVNM_015559c.G1202Ap.R401Q32.01.0E-4Guo2018 T
Wang2016 T
SETBP1     MSSNG00347-004chr18:
42636094-42636095
CTCintronicDe novo--Trost2022 G
SETBP1     REACH000589chr18:
42749879-42749879
AGintergenicDe novo--Trost2022 G
SETBP1     REACH000653chr18:
42545633-42545633
AGintronicDe novo--Trost2022 G
SETBP1     2-1784-003chr18:
42601839-42601839
TAintronicDe novo--Trost2022 G
SETBP1     4899chr18:
42532022-42532022
CGexonicDe novononsynonymous SNVNM_015559c.C2717Gp.P906R11.58-Trost2022 G
SETBP1     ITAN_2018chr18:
42532265-42532265
GAexonicPaternalnonsynonymous SNVNM_015559c.G2960Ap.R987Q21.98.241E-6Wang2020 T
SETBP1     MSSNG00014-004chr18:
42537074-42537074
AGintronicDe novo--Trost2022 G
SETBP1     Hu2022:79chr18:
42529856-42529856
GTexonicUnknownnonsynonymous SNVNM_015559c.G551Tp.R184M18.94-Hu2022 T
SETBP1     Gecz3_41058chr18:
42533017-42533017
GAexonicUnknownnonsynonymous SNVNM_015559c.G3712Ap.D1238N34.08.241E-6Wang2020 T
SETBP1     1-1131-003chr18:
42762489-42762489
ACintergenicDe novo--Trost2022 G
SETBP1     MT_156.3chr18:
42771400-42771400
AGintergenicDe novo--Trost2022 G
SETBP1     AU071Achr18:
42531877-42531877
GAexonicDe novo, Unknownnonsynonymous SNVNM_015559c.G2572Ap.E858K23.4-DeRubeis2014 E
Kosmicki2017 E
Lim2017 E
Satterstrom2020 E
Trost2022 G
Wang2020 T
Zhou2022 GE
SETBP1     1-0271-004chr18:
42460813-42460813
CTintronicDe novo--Trost2022 G
Yuen2017 G
SETBP1     7-0100-004chr18:
42450132-42450132
CTintronicDe novo--Trost2022 G
Yuen2017 G
SETBP1     ACGC_YN0002.p1chr18:
42618476-42618476
GAexonicMaternalnonsynonymous SNVNM_015559c.G4027Ap.D1343N32.0-Wang2020 T
SETBP1     SAGE_BK_709_01chr18:
42530872-42530873
CACexonicMaternalframeshift deletionNM_015559c.1568delAp.H523fs--Wang2020 T
SETBP1     246927chr18:
42533267-42533267
GTexonicUnknownnonsynonymous SNVNM_015559c.G3962Tp.R1321L26.21.673E-5Stessman2017 T
SETBP1     SP0056870chr18:
42529892-42529892
GAexonicDe novononsynonymous SNVNM_015559c.G587Ap.G196D14.76-Fu2022 E
Trost2022 G
Zhou2022 GE
SETBP1     1-0721-003chr18:
42531877-42531877
GAexonicnonsynonymous SNVNM_015559c.G2572Ap.E858K23.4-Zhou2022 GE
SETBP1     SP0076214chr18:
42643487-42643487
CTexonicnonsynonymous SNVNM_015559c.C4615Tp.P1539S10.55-Zhou2022 GE
SETBP1     2-1358-003chr18:
42763804-42763804
AGintergenicDe novo--Yuen2017 G
SETBP1     7-0171-003chr18:
42741890-42741890
GCintergenicDe novo--Yuen2017 G
SETBP1     SP0081761chr18:
42532129-42532129
CTexonicDe novononsynonymous SNVNM_015559c.C2824Tp.R942W14.053.301E-5Fu2022 E
Trost2022 G
Zhou2022 GE
SETBP1     YN0002.p1chr18:
42618476-42618476
GAexonicMaternalnonsynonymous SNVNM_015559c.G4027Ap.D1343N32.0-Guo2018 T
SETBP1     2-1365-003chr18:
42523863-42523863
GAintronicDe novo--Trost2022 G
Yuen2016 G
Yuen2017 G
SETBP1     AU4372309chr18:
42411038-42411038
CTintronicDe novo--Trost2022 G
Yuen2017 G
SETBP1     13393.p1chr18:
42260089-42260089
TCupstreamDe novo--Turner2016 G
Source Variant Information

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Source:

Paper alias:

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Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
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