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Results for "SEC13"
Variant Events: 8
Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
SEC13
PN400512
chr3:
10360856-10360856
C
T
exonic
Unknown
synonymous SNV
NM_001136026
c.G108A
p.R36R
17.34
2.0E-4
Leblond2019
E
SEC13
111297
chr3:
10354325-10354325
A
G
exonic
nonsynonymous SNV
NM_001136232
NM_001278946
NM_183352
NM_001136026
NM_030673
c.T212C
c.T254C
c.T254C
c.T392C
c.T263C
p.I71T
p.I85T
p.I85T
p.I131T
p.I88T
25.2
-
Woodbury-Smith2022
E
SEC13
Marques2022:218
chr3:
10357089-10357089
C
T
exonic
nonsynonymous SNV
NM_001136232
NM_001278946
NM_183352
NM_001136026
NM_030673
c.G38A
c.G80A
c.G80A
c.G218A
c.G89A
p.R13H
p.R27H
p.R27H
p.R73H
p.R30H
35.0
9.141E-5
Marques2022
E
T
SEC13
Marques2022:217
chr3:
10354325-10354325
A
G
exonic
nonsynonymous SNV
NM_001136232
NM_001278946
NM_183352
NM_001136026
NM_030673
c.T212C
c.T254C
c.T254C
c.T392C
c.T263C
p.I71T
p.I85T
p.I85T
p.I131T
p.I88T
25.2
-
Marques2022
E
T
SEC13
1-0581-003
chr3:
10356103-10356103
G
C
intronic
De novo
-
-
Trost2022
G
SEC13
3-0339-000
chr3:
10361121-10361121
G
C
intronic
De novo
-
-
Trost2022
G
SEC13
AU2975301
chr3:
10348410-10348410
A
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
SEC13
3-0404-000A
chr3:
10355245-10355245
C
T
intronic
De novo
-
-
Trost2022
G
Source Variant Information
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Source:
Paper alias:
No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes
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