Variant Results

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Results for "PCDHA13"

Variant Events: 4

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported
PCDHA13	12773.p1	Complex Event; expand row to view variants					De novo	frameshift deletion	NM_018904 NM_031865 NM_018904 NM_031865	c.2034_2037del c.2034_2037del c.2035_2038del c.2035_2038del	p.A678fs p.A678fs p.S679fs p.S679fs	-	-	Dong2014 E Iossifov2012 E Iossifov2014 E Ji2016 E Kosmicki2017 E Satterstrom2020 E Wilfert2021 G Willsey2013 E Zhou2022 GE
PCDHA13	AU2463301	chr5: 140264136-140264136	G	A	exonic		De novo	synonymous SNV	NM_018904 NM_031865	c.G2283A c.G2283A	p.G761G p.G761G	-	-	Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G Trost2022 G
PCDHA13	NDAR_INVVV360YH4_wes1	chr5: 140263769-140263769	A	T	exonic		De novo	nonsynonymous SNV	NM_018904 NM_031865	c.A1916T c.A1916T	p.E639V p.E639V	13.0	-	DeRubeis2014 E Fu2022 E Kosmicki2017 E Lim2017 E Satterstrom2020 E Trost2022 G Zhou2022 GE
PCDHA13	SSC05600	chr5: 140263886-140263890	CTTCG	C	exonic		De novo	frameshift deletion	NM_018904 NM_031865	c.2034_2037del c.2034_2037del	p.A678fs p.A678fs	-	-	Fu2022 E Trost2022 G

Source Variant Information

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Paper Information

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Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
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