Variant Results

or

Results for "KCNT2"

Variant Events: 44

Gene Gene symbol on which the variant is located	ID Subject Identifier from the original study	Location Genomic location of the reference allele	REF Reference allele	ALT Alternate allele	Context Variant functional categories	Variant validation performed by an orthogonal method and reported	Inheritance Reported inheritance status	Effects Variant effect on transcript per Annovar	Transcript Transcript used for the cDNA/Protein mutation	cDNA cDNA variant notation	Protein Protein variant notation	CADD-Phred v1.0 CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores	ExAC v0.3 ExAC population frequency (version 0.3)	Sources Source(s) where variants from this event are reported

KCNT2

1-0563-004

chr1:
196201126-196201126

A

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

AU3506303

chr1:
196513658-196513658

A

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

10C105736

chr1:
196395019-196395019

C

G

exonic

De novo

nonsynonymous SNV

NM_001287819
NM_001287820
NM_198503

c.G1084C
c.G1084C
c.G1084C

p.G362R
p.G362R
p.G362R

29.8

-

DeRubeis2014 E
Fu2022 E
Kosmicki2017 E
Lim2017 E
Satterstrom2020 E
Trost2022 G
Zhou2022 GE

KCNT2

AU3397302

chr1:
196541907-196541907

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

AU4429301

chr1:
196616350-196616350

C

G

intergenic

De novo

-

Yuen2017 G

KCNT2

2-0090-003

chr1:
196267485-196267485

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

AU3911301

chr1:
196240618-196240618

T

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

2-1743-004A

chr1:
196312409-196312409

G

C

intronic

De novo

-

Trost2022 G

KCNT2

2-0305-003

chr1:
196311078-196311078

G

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1030

chr1:
196273933-196273933

C

T

intronic

De novo

-

Trost2022 G

KCNT2

1-0414-005

chr1:
196325658-196325658

A

G

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1014

chr1:
196346056-196346056

G

A

intronic

De novo

-

Trost2022 G

KCNT2

AU3702306

chr1:
196330995-196330999

GCAAT

G

intronic

De novo

-

Trost2022 G

KCNT2

AU3175302

chr1:
196402973-196402973

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

4-0062-003

chr1:
196260159-196260160

GT

CC

intronic

De novo

-

Trost2022 G

KCNT2

MSSNG00042-004

chr1:
196229798-196229798

T

C

intronic

De novo

-

Trost2022 G

KCNT2

AU055603

chr1:
196425278-196425278

G

C

intronic

De novo

-

Trost2022 G

KCNT2

2-1784-003

chr1:
196419099-196419099

G

C

intronic

De novo

-

Trost2022 G

KCNT2

3-0284-000

chr1:
196441753-196441754

GT

CC

intronic

De novo

-

Trost2022 G

KCNT2

1-0354-006

chr1:
196350447-196350447

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1-0546-003

chr1:
196413226-196413240

AAGAGAGAGAGAGAG

AAGAGAGAGAGAG

intronic

De novo

-

Yuen2017 G

KCNT2

1-1169-003

chr1:
196435096-196435097

GA

G

intronic

De novo

-

Trost2022 G

KCNT2

7-0449-003

chr1:
196368831-196368831

A

G

intronic

De novo

-

Trost2022 G

KCNT2

2-1243-003

chr1:
196346826-196346826

G

A

intronic

De novo

-

Trost2022 G

KCNT2

MSSNG00415-003

chr1:
196409950-196409950

T

C

intronic

De novo

-

Trost2022 G

KCNT2

1-1195-003

chr1:
196401258-196401258

G

C

intronic

De novo

-

Trost2022 G

KCNT2

7-0413-003

chr1:
196510679-196510679

T

G

intronic

De novo

-

Trost2022 G

KCNT2

3-0080-000

chr1:
196584786-196584786

T

C

intergenic

De novo

-

Yuen2016 G
Yuen2017 G

KCNT2

AU0540301

chr1:
196211559-196211559

T

C

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1-0206-003

chr1:
196248613-196248613

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

AUTPGX_1015

chr1:
196481355-196481355

C

A

intronic

De novo

-

Trost2022 G

KCNT2

AU2504301

chr1:
196478268-196478268

G

T

intronic

De novo

-

Trost2022 G

KCNT2

7-0223-003

chr1:
196591161-196591161

T

A

intergenic

De novo

-

Yuen2017 G

KCNT2

2-1228-003

chr1:
196381005-196381005

A

G

intronic

De novo

-

Yuen2016 G

KCNT2

AU055603

chr1:
196504984-196504984

A

C

intronic

De novo

-

Trost2022 G

KCNT2

REACH000239

chr1:
196504425-196504425

T

C

intronic

De novo

-

Trost2022 G

KCNT2

1-0032-003

chr1:
196433052-196433052

G

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

AU3451301

chr1:
196427096-196427096

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1-0138-004

chr1:
196210410-196210410

A

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

14319.p1

chr1:
196303054-196303054

C

T

exonic

Mosaic

synonymous SNV

NM_001287820
NM_001287819
NM_198503

c.G1770A
c.G1920A
c.G1920A

p.S590S
p.S640S
p.S640S

-

8.312E-6

Dou2017 E

KCNT2

1-0489-003

chr1:
196497399-196497399

C

T

intronic

De novo

-

Trost2022 G
Yuen2016 G
Yuen2017 G

KCNT2

5-0046-003

chr1:
196473197-196473197

C

A

intronic

De novo

-

Trost2022 G
Yuen2017 G

KCNT2

1-0068-003

chr1:
196248552-196248552

T

A

intronic

De novo

-

Yuen2017 G

KCNT2

5-0099-003

chr1:
196334243-196334243

C

T

intronic

De novo

-

Trost2022 G
Yuen2017 G

Source Variant Information

, -

Source:

Paper alias:

No records found.

Paper Information

Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count	The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes	View
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