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Results for "SIX2"
Variant Events: 12
Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
SIX2
AU2029303
chr2:
45379986-45379986
T
C
intergenic
De novo
-
-
Yuen2017
G
SIX2
08C79293
chr2:
45235850-45235850
T
A
exonic
De novo
stopgain
NM_016932
c.A400T
p.K134X
41.0
-
DeRubeis2014
E
Fu2022
E
Kosmicki2017
E
Lim2017
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
SIX2
2-0022-004
chr2:
45359063-45359063
G
A
intergenic
De novo
-
-
Yuen2017
G
SIX2
2-1456-004
chr2:
45341158-45341158
G
A
intergenic
De novo
-
-
Yuen2017
G
SIX2
AU4099301
chr2:
45263542-45263542
A
T
intergenic
De novo
-
-
Yuen2017
G
SIX2
SP0129913
chr2:
45235840-45235840
C
G
exonic
De novo
nonsynonymous SNV
NM_016932
c.G410C
p.S137T
15.8
-
Fu2022
E
Trost2022
G
Zhou2022
G
E
SIX2
AU011021
chr2:
45292387-45292387
G
A
intergenic
De novo
-
-
Yuen2017
G
SIX2
2-1272-003
chr2:
45331008-45331008
T
C
intergenic
De novo
-
-
Yuen2016
G
SIX2
2-1207-003
chr2:
45266108-45266108
G
T
intergenic
De novo
-
-
Yuen2016
G
SIX2
1-0373-003
chr2:
45315304-45315304
C
T
intergenic
De novo
-
-
Yuen2017
G
SIX2
2-1085-003
chr2:
45245591-45245591
T
A
intergenic
De novo
-
-
Yuen2017
G
SIX2
AU3343301
chr2:
45296271-45296271
A
G
intergenic
De novo
-
-
Yuen2017
G
Source Variant Information
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Source:
Paper alias:
No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes
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