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Results for "Tammimies2015"

Variant Events: 96

Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
ABCA6     3-0385-000chr17:
67136812-67136812
TGexonicDe novononsynonymous SNVNM_080284c.A33Cp.Q11H18.39-Tammimies2015 E
MARCO     3-0371-000chr2:
119739065-119739065
GAexonicDe novononsynonymous SNVNM_006770c.G847Ap.G283R3.8343.395E-5Tammimies2015 E
PSMD6     3-0393-000chr3:
63996422-63996422
CTexonicDe novostopgainNM_001271780
NM_001271781
NM_014814
NM_001271779
c.G978A
c.G975A
c.G1092A
c.G1251A
p.W326X
p.W325X
p.W364X
p.W417X
37.0-Tammimies2015 E
SPARCL1     3-0391-000chr4:
88412805-88412805
GAexonicDe novononsynonymous SNVNM_001291977
NM_004684
NM_001128310
NM_001291976
c.C881T
c.C1256T
c.C1256T
c.C881T
p.T294M
p.T419M
p.T419M
p.T294M
10.69-Tammimies2015 E
SCUBE2     3-0402-000chr11:
9111335-9111335
CTexonicDe novononsynonymous SNVNM_001170690
NM_020974
c.G175A
c.G175A
p.D59N
p.D59N
12.934.119E-5Tammimies2015 E
PCLO     3-0393-000chr7:
82584377-82584377
CTexonicDe novosynonymous SNVNM_014510
NM_033026
c.G5892A
c.G5892A
p.T1964T
p.T1964T
-4.151E-5Tammimies2015 E
USP3     3-0409-000chr15:
63824890-63824890
AGexonicDe novononsynonymous SNVNM_001256702
NM_006537
c.A136G
c.A136G
p.S46G
p.S46G
15.122.0E-4Tammimies2015 E
LENG9     3-0402-000chr19:
54973833-54973833
GAexonicDe novononsynonymous SNVNM_001301782
NM_198988
c.C877T
c.C943T
p.P293S
p.P315S
10.61-Tammimies2015 E
NAB1     3-0409-000chr2:
191524448-191524448
GAexonicDe novosynonymous SNVNM_005966c.G546Ap.A182A-6.666E-5Tammimies2015 E
NBAS     3-0409-000 Complex Event; expand row to view variants  De novononsynonymous SNV, synonymous SNVNM_015909
NM_015909
c.C5226T
c.A5225T
p.H1742H
p.H1742L
21.7-Tammimies2015 E
Tammimies2015 E
CEP192     3-0410-000chr18:
13019104-13019104
AGexonicDe novononsynonymous SNVNM_032142c.A949Gp.S317G0.053-Tammimies2015 E
KRT31     3-0410-000chr17:
39551867-39551867
AGexonicDe novosynonymous SNVNM_002277c.T597Cp.N199N--Tammimies2015 E
RORA     3-0465-000chr15:
60806942-60806945
TCTCTexonicDe novononframeshift deletionNM_134262
NM_002943
NM_134261
NM_134260
c.129_131del
c.369_371del
c.294_296del
c.393_395del
p.43_44del
p.123_124del
p.98_99del
p.131_132del
--Tammimies2015 E
SLC20A2     3-0410-000chr8:
42287662-42287662
TCexonicDe novosynonymous SNVNM_001257180
NM_001257181
NM_006749
c.A1629G
c.A1629G
c.A1629G
p.G543G
p.G543G
p.G543G
--Tammimies2015 E
LVRN     3-0503-000chr5:
115323514-115323514
GCexonicDe novononsynonymous SNVNM_173800c.G983Cp.R328P16.25-Tammimies2015 E
GPR171     3-0469-000chr3:
150916649-150916649
AGexonicDe novosynonymous SNVNM_013308c.T525Cp.N175N-1.656E-5Tammimies2015 E
LRP6     3-0504-000chr12:
12288208-12288208
CTexonicDe novononsynonymous SNVNM_002336c.G3634Ap.G1212S34.0-Tammimies2015 E
HTR5A     3-0503-000chr7:
154876164-154876164
CAexonicDe novononsynonymous SNVNM_024012c.C1041Ap.S347R15.69-Tammimies2015 E
SLITRK5     3-0027-000chr13:
88329338-88329338
GAexonicMaternalstopgainNM_015567c.G1695Ap.W565X38.0-Tammimies2015 E
DPY19L4     3-0504-000chr8:
95774047-95774047
GAexonicDe novosynonymous SNVNM_181787c.G855Ap.V285V0.093-Tammimies2015 E
TCF12     3-0459-000chr15:
57535740-57535740
CCGexonicMaternalframeshift insertionNM_001306220
NM_001306219
NM_207040
NM_003205
NM_207036
NM_207037
NM_207038
c.398_399insG
c.596_597insG
c.596_597insG
c.1106_1107insG
c.1106_1107insG
c.1106_1107insG
c.1106_1107insG
p.P133fs
p.P199fs
p.P199fs
p.P369fs
p.P369fs
p.P369fs
p.P369fs
--Tammimies2015 E
FGFR2     3-0211-000chr10:
123258119-123258119
TCexonicPaternalnonsynonymous SNVNM_001144914
NM_001144916
NM_001144917
NM_001144918
NM_023029
NM_001144913
NM_001144915
NM_001144919
NM_000141
NM_022970
c.A1226G
c.A1217G
c.A1214G
c.A1211G
c.A1295G
c.A1565G
c.A1295G
c.A1298G
c.A1562G
c.A1565G
p.D409G
p.D406G
p.D405G
p.D404G
p.D432G
p.D522G
p.D432G
p.D433G
p.D521G
p.D522G
13.682.472E-5Tammimies2015 E
ARHGAP31     3-0025-000chr3:
119109669-119109669
CTexonicDe novosynonymous SNVNM_020754c.C720Tp.A240A--Tammimies2015 E
GBF1     3-0005-000chr10:
104129511-104129511
GAexonicDe novononsynonymous SNVNM_001199378
NM_001199379
NM_004193
c.G3194A
c.G3191A
c.G3191A
p.R1065Q
p.R1064Q
p.R1064Q
25.72.472E-5Tammimies2015 E
RYR1     3-0027-000chr19:
39025386-39025386
CTexonicDe novosynonymous SNVNM_001042723
NM_000540
c.C11271T
c.C11286T
p.L3757L
p.L3762L
--Tammimies2015 E
MUC15     3-0027-000chr11:
26587227-26587227
TCexonicDe novononsynonymous SNVNM_145650
NM_001135091
NM_001135092
c.A179G
c.A260G
c.A260G
p.E60G
p.E87G
p.E87G
13.53-Tammimies2015 E
ACE       3-0031-000chr17:
61559006-61559022
TCTGGGAAGGGTCGATGTexonicDe novoframeshift deletionNM_000789c.1026_1041delp.F342fs--Tammimies2015 E
OR5F1     3-0031-000chr11:
55761926-55761926
AGexonicDe novononsynonymous SNVNM_003697c.T176Cp.M59T13.83-Tammimies2015 E
EPCAM     3-0058-000chr2:
47612316-47612316
AGexonicDe novosynonymous SNVNM_002354c.A870Gp.R290R--Tammimies2015 E
ADSS     3-0053-000chr1:
244587309-244587309
CTexonicDe novononsynonymous SNVNM_001126c.G527Ap.R176Q36.0-Tammimies2015 E
SCAF1     3-0059-000chr19:
50156162-50156162
TCexonicDe novononsynonymous SNVNM_021228c.T2516Cp.V839A13.08-Tammimies2015 E
PRMT7     3-0058-000chr16:
68389650-68389650
AGexonicDe novononsynonymous SNVNM_001184824
NM_001290018
NM_019023
c.A1525G
c.A1675G
c.A1675G
p.R509G
p.R559G
p.R559G
15.72-Tammimies2015 E
DCHS1     3-0075-000chr11:
6644563-6644563
GAexonicDe novononsynonymous SNVNM_003737c.C8344Tp.R2782W12.237.572E-5Tammimies2015 E
OR2M5     3-0070-000chr1:
248309147-248309147
GCexonicDe novononsynonymous SNVNM_001004690c.G698Cp.G233A8.864-Tammimies2015 E
ADNP2     3-0080-000chr18:
77895382-77895382
TGexonicDe novononsynonymous SNVNM_014913c.T2086Gp.C696G16.22-Tammimies2015 E
PRR14L     3-0075-000chr22:
32112105-32112105
TCexonicDe novononsynonymous SNVNM_173566c.A1720Gp.S574G15.74-Tammimies2015 E
ESPNL     3-0094-000chr2:
239040083-239040083
GAexonicDe novononsynonymous SNVNM_001308370
NM_194312
c.G1624A
c.G2728A
p.A542T
p.A910T
18.451.078E-5Tammimies2015 E
USP51     3-0080-000chrX:
55513637-55513637
GAexonicDe novononsynonymous SNVNM_201286c.C1736Tp.S579F14.78-Tammimies2015 E
KIF27     3-0096-000chr9:
86518307-86518307
CTexonicDe novononsynonymous SNVNM_001271927
NM_001271928
NM_017576
c.G1126A
c.G1126A
c.G1126A
p.G376S
p.G376S
p.G376S
0.0148.238E-6Tammimies2015 E
WAC     3-0095-000chr10:
28879726-28879736
TGCAAGCAACATexonicDe novoframeshift deletionNM_016628
NM_100264
NM_100486
c.576_585del
c.441_450del
c.576_585del
p.M192fs
p.M147fs
p.M192fs
--Tammimies2015 E
Tammimies2015 E
FAXC     3-0101-000chr6:
99771430-99771430
GAexonicDe novononsynonymous SNVNM_032511c.C713Tp.T238M14.961.65E-5Tammimies2015 E
LMX1B     3-0096-000chr9:
129458577-129458577
CTexonicDe novosynonymous SNVNM_001174146
NM_001174147
NM_002316
c.C1068T
c.C1056T
c.C1035T
p.N356N
p.N352N
p.N345N
-8.269E-6Tammimies2015 E
TDRD1     3-0109-000chr10:
115973247-115973247
GAexonicDe novosynonymous SNVNM_198795c.G1974Ap.T658T-1.648E-5Tammimies2015 E
ARMC4     3-0109-000chr10:
28149756-28149756
TAexonicDe novononsynonymous SNVNM_001290021
NM_001312689
NM_001290020
NM_018076
c.A1394T
c.A1895T
c.A2819T
c.A2819T
p.H465L
p.H632L
p.H940L
p.H940L
3.888-Tammimies2015 E
FBP2     3-0109-000chr9:
97333814-97333814
GAexonicDe novononsynonymous SNVNM_003837c.C497Tp.A166V22.12.0E-4Tammimies2015 E
SPEF2     3-0109-000chr5:
35740319-35740319
GAexonicDe novononsynonymous SNVNM_024867c.G3280Ap.D1094N32.0-Tammimies2015 E
G3BP1     3-0134-000chr5:
151166277-151166277
GAsplicingDe novosplicing14.6-Tammimies2015 E
POTEA   3-0111-000chr8:
43157164-43157164
TCexonicDe novosynonymous SNVNM_001005365c.T744Cp.S248S--Tammimies2015 E
GDF2     3-0140-000chr10:
48414275-48414275
TCexonicDe novononsynonymous SNVNM_016204c.A593Gp.Q198R2.256-Tammimies2015 E
ASH1L     3-0140-000chr1:
155324288-155324288
GAexonicDe novostopgainNM_018489c.C7189Tp.R2397X51.0-Tammimies2015 E
Tammimies2015 E
CDK8     3-0161-000chr13:
26967554-26967554
AGexonicDe novononsynonymous SNVNM_001260c.A697Gp.I233V16.51-Tammimies2015 E
KLHL18     3-0140-000chr3:
47376220-47376220
GAexonicDe novononsynonymous SNVNM_025010c.G809Ap.R270Q27.52.0E-4Tammimies2015 E
TOP2B     3-0161-000chr3:
25671897-25671897
GAexonicDe novononsynonymous SNVNM_001068c.C1454Tp.A485V35.0-Tammimies2015 E
PRR19     3-0161-000chr19:
42813829-42813829
GCexonicDe novononsynonymous SNVNM_199285c.G93Cp.K31N8.564-Tammimies2015 E
MAST4     3-0163-000chr5:
66400357-66400357
GCexonicDe novononsynonymous SNVNM_001297651
NM_001290226
NM_001290227
NM_015183
NM_001164664
c.G728C
c.G692C
c.G728C
c.G743C
c.G1310C
p.R243P
p.R231P
p.R243P
p.R248P
p.R437P
25.02.536E-5Tammimies2015 E
MTHFSD     3-0163-000chr16:
86585881-86585881
GCexonicDe novosynonymous SNVNM_001159378
NM_001159379
c.C141G
c.C138G
p.A47A
p.A46A
-1.635E-5Tammimies2015 E
INPP5F     3-0186-000chr10:
121579002-121579002
CGexonicDe novononsynonymous SNVNM_001243194c.C7Gp.H3D13.96-Tammimies2015 E
RGS12     3-0178-000chr4:
3317988-3317988
GCexonicDe novononsynonymous SNVNM_002926
NM_198229
c.G91C
c.G91C
p.G31R
p.G31R
18.19-Tammimies2015 E
TNRC6B     3-0191-000chr22:
40660882-40660882
CGexonicDe novosynonymous SNVNM_001162501
NM_015088
c.C648G
c.C648G
p.T216T
p.T216T
--Tammimies2015 E
GOLPH3L     3-0186-000chr1:
150636154-150636154
TCexonicDe novononsynonymous SNVNM_018178c.A269Gp.Y90C4.8348.244E-6Tammimies2015 E
PZP     3-0209-000chr12:
9317793-9317793
CGexonicDe novononsynonymous SNVNM_002864c.G2429Cp.R810P8.349-Tammimies2015 E
TALDO1     3-0209-000chr11:
760129-760129
TCexonicDe novononsynonymous SNVNM_006755c.T337Cp.F113L22.8-Tammimies2015 E
MARK1     3-0215-000chr1:
220835359-220835359
GAexonicDe novononsynonymous SNVNM_001286128
NM_001286126
NM_001286124
NM_018650
c.G2128A
c.G2194A
c.G2242A
c.G2239A
p.A710T
p.A732T
p.A748T
p.A747T
20.42.0E-4Tammimies2015 E
TRIOBP     3-0209-000 Complex Event; expand row to view variants  De novononsynonymous SNVNM_001039141
NM_001039141
c.T5102G
c.C5101G
p.L1701R
p.L1701V
12.83-Tammimies2015 E
Tammimies2015 E
LDLR     3-0223-000chr19:
11213417-11213417
GAexonicDe novononsynonymous SNVNM_000527
NM_001195798
NM_001195800
NM_001195803
c.G268A
c.G268A
c.G268A
c.G268A
p.D90N
p.D90N
p.D90N
p.D90N
23.14.942E-5Tammimies2015 E
ABLIM1     3-0215-000chr10:
116233698-116233698
CTexonicDe novosynonymous SNVNM_006720
NM_001003407
NM_002313
NM_001003408
c.G195A
c.G879A
c.G1059A
c.G963A
p.S65S
p.S293S
p.S353S
p.S321S
5.776-Tammimies2015 E
KIAA1024     3-0227-000chr15:
79750338-79750338
CTexonicDe novononsynonymous SNVNM_015206c.C1849Tp.R617C17.561.649E-5Tammimies2015 E
AREL1     3-0227-000chr14:
75151252-75151253
CGCexonicDe novostopgainNM_001039479c.147delCp.Y49X--Tammimies2015 E
HIST1H2AD     3-0227-000chr6:
26199346-26199346
CTexonicDe novosynonymous SNVNM_021065c.G126Ap.E42E--Tammimies2015 E
PHKB     3-0227-000chr16:
47614206-47614206
CGexonicDe novononsynonymous SNVNM_000293
NM_001031835
c.C711G
c.C690G
p.S237R
p.S230R
14.05-Tammimies2015 E
ACSL5     3-0253-000chr10:
114170349-114170349
GAexonicDe novononsynonymous SNVNM_016234
NM_203379
NM_203380
c.G920A
c.G752A
c.G752A
p.S307N
p.S251N
p.S251N
13.02-Tammimies2015 E
CUL7     3-0227-000chr6:
43018958-43018958
GAexonicDe novosynonymous SNVNM_001168370
NM_014780
c.C1233T
c.C981T
p.P411P
p.P327P
-2.0E-4Tammimies2015 E
ATG4B     3-0254-000chr2:
242611640-242611640
CTexonicDe novosynonymous SNVNM_013325c.C1143Tp.F381F-9.413E-5Tammimies2015 E
EFTUD2     3-0254-000chr17:
42932002-42932002
CTexonicDe novosynonymous SNVNM_001142605
NM_001258353
NM_001258354
NM_004247
c.G2076A
c.G2181A
c.G2151A
c.G2181A
p.L692L
p.L727L
p.L717L
p.L727L
--Tammimies2015 E
NAGA     3-0262-000chr22:
42463262-42463262
GAexonicDe novosynonymous SNVNM_000262c.C357Tp.Y119Y--Tammimies2015 E
SCN2A     3-0261-000chr2:
166237202-166237202
GCexonicDe novononsynonymous SNVNM_001040143
NM_001040142
NM_021007
c.G4409C
c.G4409C
c.G4409C
p.G1470A
p.G1470A
p.G1470A
26.1-Tammimies2015 E
Tammimies2015 E
HIST1H2BJ     3-0270-000chr6:
27100214-27100214
CAexonicDe novostopgainNM_021058c.G316Tp.E106X15.51-Tammimies2015 E
SERINC5     3-0262-000chr5:
79465157-79465157
CTsplicingDe novosplicing14.578.289E-6Tammimies2015 E
COL28A1     3-0270-000chr7:
7514248-7514248
GCexonicDe novostopgainNM_001037763c.C1286Gp.S429X39.0-Tammimies2015 E
ZDHHC14     3-0270-000chr6:
158094104-158094104
TCexonicDe novononsynonymous SNVNM_024630
NM_153746
c.T1417C
c.T1372C
p.S473P
p.S458P
18.32-Tammimies2015 E
PDIA5     3-0309-000chr3:
122864390-122864390
TCexonicDe novononsynonymous SNVNM_006810c.T932Cp.M311T22.64.119E-5Tammimies2015 E
TRIM23     3-0294-000chr5:
64892877-64892877
CTsplicingDe novosplicing31.0-Tammimies2015 E
NCK2     3-0312-000chr2:
106471675-106471675
GAexonicDe novosynonymous SNVNM_001004720
NM_001004722
NM_003581
c.G156A
c.G156A
c.G156A
p.P52P
p.P52P
p.P52P
-4.382E-5Tammimies2015 E
GMPS     3-0309-000chr3:
155615774-155615774
GTexonicDe novononsynonymous SNVNM_003875c.G268Tp.D90Y29.0-Tammimies2015 E
OR4E2     3-0314-000chr14:
22133323-22133323
GTexonicDe novosynonymous SNVNM_001001912c.G27Tp.V9V--Tammimies2015 E
ELMOD1     3-0314-000chr11:
107501449-107501449
ACexonicDe novononsynonymous SNVNM_001130037
NM_018712
NM_001308018
c.A187C
c.A187C
c.A169C
p.S63R
p.S63R
p.S57R
12.35-Tammimies2015 E
STOML2     3-0318-000chr9:
35101724-35101724
GAexonicDe novosynonymous SNVNM_001287033
NM_001287031
NM_001287032
NM_013442
c.C289T
c.C427T
c.C274T
c.C427T
p.L97L
p.L143L
p.L92L
p.L143L
--Tammimies2015 E
FAM120B     3-0314-000chr6:
170632250-170632250
CGexonicDe novosynonymous SNVNM_001286379
NM_001286380
NM_032448
c.C1854G
c.C1887G
c.C1818G
p.T618T
p.T629T
p.T606T
--Tammimies2015 E
TPM3     3-0329-000chr1:
154143940-154143940
CTexonicDe novosynonymous SNVNM_001043351
NM_001043353
NM_001278191
NM_152263
c.G480A
c.G480A
c.G210A
c.G591A
p.E160E
p.E160E
p.E70E
p.E197E
--Tammimies2015 E
XIRP2     3-0325-000chr2:
168103257-168103257
TCexonicDe novosynonymous SNVNM_001199144
NM_152381
c.T4689C
c.T5355C
p.V1563V
p.V1785V
--Tammimies2015 E
PTPN13     3-0330-000chr4:
87705691-87705691
CAexonicDe novononsynonymous SNVNM_080684
NM_006264
NM_080683
NM_080685
c.C5525A
c.C6041A
c.C6098A
c.C6113A
p.P1842Q
p.P2014Q
p.P2033Q
p.P2038Q
0.028-Tammimies2015 E
IGLL5     3-0330-000chr22:
23230296-23230296
GCexonicDe novononsynonymous SNVNM_001178126c.G63Cp.R21S10.25-Tammimies2015 E
PEX11G     3-0338-000chr19:
7553881-7553881
CAexonicDe novononsynonymous SNVNM_001270539
NM_080662
c.G16T
c.G16T
p.G6C
p.G6C
18.07-Tammimies2015 E
RFX6     3-0330-000chr6:
117248533-117248533
CAexonicDe novononsynonymous SNVNM_173560c.C2229Ap.S743R15.05-Tammimies2015 E
TANGO2     3-0368-000chr22:
20050958-20050958
GAexonicDe novononsynonymous SNVNM_001283179
NM_001283186
NM_001283199
NM_001283235
NM_001283116
NM_001283129
NM_001283148
NM_001283154
NM_152906
NM_001283106
c.G517A
c.G517A
c.G478A
c.G409A
c.G703A
c.G826A
c.G701A
c.G701A
c.G703A
c.G703A
p.G173S
p.G173S
p.G160S
p.G137S
p.G235S
p.G276S
p.R234Q
p.R234Q
p.G235S
p.G235S
27.58.747E-6Tammimies2015 E
MCM8     3-0338-000chr20:
5933076-5933076
CTexonicDe novononsynonymous SNVNM_001281520
NM_001281521
NM_001281522
NM_032485
NM_182802
c.C155T
c.C155T
c.C155T
c.C155T
c.C155T
p.T52I
p.T52I
p.T52I
p.T52I
p.T52I
11.098.315E-6Tammimies2015 E
Source Variant Information

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Source:

Paper alias:

No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notesView
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