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Results for "PCLO"
Variant Events: 112
Gene
Gene symbol on which the variant is located
ID
Subject Identifier from the original study
Location
Genomic location of the reference allele
REF
Reference allele
ALT
Alternate allele
Context
Variant functional categories
Variant validation performed by an orthogonal method and reported
Inheritance
Reported inheritance status
Effects
Variant effect on transcript per Annovar
Transcript
Transcript used for the cDNA/Protein mutation
cDNA
cDNA variant notation
Protein
Protein variant notation
CADD-Phred v1.0
CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores
ExAC v0.3
ExAC population frequency (version 0.3)
Sources
Source(s) where variants from this event are reported
PCLO
3-0393-000
chr7:
82584377-82584377
C
T
exonic
De novo
synonymous SNV
NM_014510
NM_033026
c.G5892A
c.G5892A
p.T1964T
p.T1964T
-
4.151E-5
Tammimies2015
E
Trost2022
G
Zhou2022
G
E
PCLO
1-0402-004
chr7:
82737028-82737028
T
TGGCC
intronic
De novo
-
-
Yuen2017
G
PCLO
AU3702307
chr7:
82423390-82423390
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
PN400587
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
1-0412-003
chr7:
82838121-82838121
A
C
intergenic
De novo
-
-
Yuen2017
G
PCLO
2-1729-003
chr7:
82853508-82853508
C
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
72-0745
chr7:
82763882-82763882
G
A
exonic
Inherited
nonsynonymous SNV
NM_014510
NM_033026
c.C2984T
c.C2984T
p.P995L
p.P995L
5.713
-
Patowary2019
E
PCLO
1-0368-004
chr7:
82727956-82727956
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
AU2139301
chr7:
82408973-82408973
G
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
2-1364-003
chr7:
82658995-82658995
T
C
intronic
De novo
-
-
Yuen2017
G
PCLO
80001101063
chr7:
82579998-82579998
C
T
exonic
De novo
synonymous SNV
NM_014510
NM_033026
c.G9906A
c.G9906A
p.Q3302Q
p.Q3302Q
-
8.282E-6
Fu2022
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
PCLO
1-0567-003
chr7:
82429943-82429943
C
G
intronic
De novo
-
-
Yuen2017
G
PCLO
2-1440-003
chr7:
82489958-82489958
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
PN400590
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
PN400386
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
PN400127
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
More2023:11
chr7:
82584378-82584378
G
A
exonic
Inherited
nonsynonymous SNV
NM_014510
NM_033026
c.C5891T
c.C5891T
p.T1964M
p.T1964M
0.029
5.0E-4
More2023
G
PCLO
AU2235301
chr7:
82544917-82544917
T
C
exonic
nonsynonymous SNV
NM_014510
NM_033026
c.A12385G
c.A12385G
p.K4129E
p.K4129E
18.36
-
Zhou2022
G
E
PCLO
3-0306-001
chr7:
82453709-82453709
T
A
exonic
synonymous SNV
NM_014510
NM_033026
c.A14439T
c.A14439T
p.T4813T
p.T4813T
-
-
Zhou2022
G
E
PCLO
PN400178
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
2-1429-003
chr7:
82542330-82542330
A
T
intronic
De novo
-
-
Yuen2017
G
PCLO
1-0010-003
chr7:
82429943-82429943
C
G
intronic
De novo
-
-
Yuen2017
G
PCLO
08C72695
chr7:
82544917-82544917
T
C
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.A12385G
c.A12385G
p.K4129E
p.K4129E
18.36
-
Fu2022
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
PCLO
5-0015-004
chr7:
82836603-82836603
C
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
AU1742302
Complex Event; expand row to view variants
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
AU4237304
chr7:
82691548-82691548
G
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
2-0278-003
chr7:
82825330-82825330
T
C
intergenic
De novo
-
-
Yuen2017
G
PCLO
AU3692301
chr7:
82901907-82901907
G
A
intergenic
De novo
-
-
Yuen2017
G
PCLO
2-0242-003
chr7:
82960839-82960839
G
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
ASP045
chr7:
82544191-82544191
T
C
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.A13111G
c.A13111G
p.M4371V
p.M4371V
8.807
8.314E-6
Fu2022
E
Satterstrom2020
E
Trost2022
G
Zhou2022
G
E
PCLO
PN400231
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
SP0254522
chr7:
82545810-82545810
C
T
exonic
nonsynonymous SNV
NM_014510
NM_033026
c.G11492A
c.G11492A
p.R3831H
p.R3831H
20.4
-
Zhou2022
G
E
PCLO
SP0100403
chr7:
82785330-82785330
A
AG
exonic
frameshift insertion
NM_014510
NM_033026
c.626dupC
c.626dupC
p.P209fs
p.P209fs
-
-
Zhou2022
G
E
PCLO
5-0065-003
chr7:
82430109-82430109
G
A
intronic
De novo
-
-
Yuen2017
G
PCLO
SP0223747
chr7:
82584914-82584914
T
A
exonic
nonsynonymous SNV
NM_014510
NM_033026
c.A5355T
c.A5355T
p.L1785F
p.L1785F
6.049
-
Zhou2022
G
E
PCLO
PN400490
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
7-0106-003
chr7:
82872794-82872795
CT
C
intergenic
De novo
-
-
Yuen2017
G
PCLO
AU4152303
chr7:
82424202-82424202
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
PN400504
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
2-0070-003
chr7:
82430599-82430599
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
AU4159301
chr7:
82795386-82795386
G
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
PN400393
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
7-0102-003
chr7:
82526914-82526914
T
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
SP0081088
chr7:
82508599-82508599
G
T
intronic
De novo
-
-
Fu2022
E
PCLO
SP0042412
chr7:
82545804-82545804
T
G
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.A11498C
c.A11498C
p.Y3833S
p.Y3833S
16.92
-
Fu2022
E
Trost2022
G
Zhou2022
G
E
PCLO
SP0062234
chr7:
82784423-82784423
G
A
exonic
De novo
stopgain
NM_014510
NM_033026
c.C1534T
c.C1534T
p.Q512X
p.Q512X
38.0
-
Fu2022
E
Trost2022
G
Zhou2022
G
E
PCLO
SP0032696
chr7:
82538248-82538248
C
T
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.G13382A
c.G13382A
p.R4461Q
p.R4461Q
16.43
8.313E-6
Fu2022
E
Trost2022
G
Zhou2022
G
E
PCLO
SP0102620
chr7:
82545390-82545390
T
A
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.A11912T
c.A11912T
p.E3971V
p.E3971V
17.97
-
Fu2022
E
Trost2022
G
Zhou2022
G
E
PCLO
2-1272-003
chr7:
82771808-82771808
T
A
intronic
De novo
-
-
Yuen2016
G
PCLO
PN400125
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
1-0395-003
chr7:
82430143-82430143
T
C
intronic
De novo
-
-
Yuen2017
G
PCLO
AU4215302
chr7:
82906018-82906018
T
G
intergenic
De novo
-
-
Yuen2017
G
PCLO
12449.p1
chr7:
82887288-82887288
T
C
intergenic
De novo
-
-
Turner2016
G
PCLO
AU4246304
chr7:
82525931-82525931
C
T
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
A26
chr7:
82911990-82911990
T
TTG
intergenic
De novo
-
-
Wu2018
G
PCLO
2-0286-004
chr7:
82937926-82937926
C
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
1-0253-004
chr7:
82429997-82429997
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82430004-82430004
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82429985-82429985
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82429993-82429993
A
G
intronic
De novo
-
-
Trost2022
G
PCLO
5-0512-005
chr7:
82416651-82416651
C
A
intronic
De novo
-
-
Trost2022
G
PCLO
2-1089-003
chr7:
82914766-82914766
A
T
intergenic
De novo
-
-
Yuen2017
G
PCLO
PN400240
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
1-0253-004
chr7:
82429980-82429980
G
C
intronic
De novo
-
-
Trost2022
G
PCLO
PN400157
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
MSSNG00255-003
chr7:
82401606-82401606
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
2-1366-003
chr7:
82430059-82430060
GT
CC
intronic
De novo
-
-
Trost2022
G
PCLO
2-0088-003
chr7:
82430059-82430060
GT
CC
intronic
De novo
-
-
Trost2022
G
PCLO
2-0088-003
chr7:
82430056-82430056
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
7-0100-004
chr7:
82430059-82430060
GT
CC
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82430015-82430015
A
C
intronic
De novo
-
-
Trost2022
G
PCLO
7-0100-004
chr7:
82430056-82430056
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82430007-82430007
A
G
intronic
De novo
-
-
Trost2022
G
PCLO
1-0253-004
chr7:
82430012-82430012
A
C
intronic
De novo
-
-
Trost2022
G
PCLO
PN400396
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
5-0129-003
chr7:
82430073-82430074
GT
ACGCCCGG
intronic
De novo
-
-
Trost2022
G
PCLO
5-0009-003
chr7:
82440017-82440017
T
G
intronic
De novo
-
-
Trost2022
G
PCLO
2-1366-003
chr7:
82430070-82430074
ACTGT
CCCGG
intronic
De novo
-
-
Trost2022
G
PCLO
2-0088-003
chr7:
82430070-82430074
ACTGT
CCCGG
intronic
De novo
-
-
Trost2022
G
PCLO
3-0058-000
chr7:
82430066-82430066
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
7-0100-004
chr7:
82430070-82430074
ACTGT
CCCGG
intronic
De novo
-
-
Trost2022
G
PCLO
3-0058-000
chr7:
82430059-82430060
GT
CC
intronic
De novo
-
-
Trost2022
G
PCLO
2-0088-003
chr7:
82430066-82430066
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
5-5101-003
chr7:
82494782-82494782
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
7-0017-003A
chr7:
82495997-82495997
C
CAT
intronic
De novo
-
-
Trost2022
G
PCLO
MSSNG00174-003
chr7:
82480422-82480422
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
REACH000696
chr7:
82493738-82493738
G
A
intronic
De novo
-
-
Trost2022
G
PCLO
1-0944-003
chr7:
82456761-82456761
A
G
intronic
De novo
-
-
Trost2022
G
PCLO
MT_58.3
chr7:
82459139-82459139
G
A
intronic
De novo
-
-
Trost2022
G
PCLO
1-0368-004
chr7:
82454673-82454673
A
C
intronic
De novo
-
-
Trost2022
G
PCLO
5-5171-003
chr7:
82455044-82455044
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
2-1763-003
chr7:
82609923-82609923
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
2-1806-003
chr7:
82610918-82610918
T
C
intronic
De novo
-
-
Trost2022
G
PCLO
AU055603
chr7:
82598698-82598698
G
T
intronic
De novo
-
-
Trost2022
G
PCLO
3-0374-000
chr7:
82606639-82606640
CT
C
intronic
De novo
-
-
Trost2022
G
PCLO
1-1197-003
chr7:
82536092-82536092
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
PN400363
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
GM182936
chr7:
82583913-82583913
G
C
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.C6356G
c.C6356G
p.S2119W
p.S2119W
10.16
8.298E-6
Fu2022
E
PCLO
1-1063-003
chr7:
82539879-82539879
C
T
intronic
De novo
-
-
Trost2022
G
PCLO
2-0103-004
chr7:
82532147-82532147
A
T
intronic
De novo
-
-
Trost2022
G
PCLO
1-1197-003
chr7:
82536088-82536088
G
T
intronic
De novo
-
-
Trost2022
G
PCLO
1-0366-003
chr7:
82532022-82532022
G
T
exonic
De novo
synonymous SNV
NM_014510
NM_033026
c.C13473A
c.C13473A
p.I4491I
p.I4491I
-
-
Yuen2015
G
PCLO
PN400507
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
2-0103-004
chr7:
82991648-82991648
G
A
intergenic
De novo
-
-
Trost2022
G
PCLO
JASD_Fam0158
chr7:
82544191-82544191
T
C
exonic
De novo
nonsynonymous SNV
NM_014510
NM_033026
c.A13111G
c.A13111G
p.M4371V
p.M4371V
8.807
8.314E-6
Takata2018
E
PCLO
7-0438-003
chr7:
82736326-82736326
G
T
intronic
De novo
-
-
Trost2022
G
PCLO
PN400241
chr7:
82543843-82543845
CAT
C
intronic
Unknown
-
3.0E-4
Leblond2019
E
PCLO
MSSNG00348-003
chr7:
82765674-82765674
C
A
intronic
De novo
-
-
Trost2022
G
PCLO
5-5046-003
chr7:
82627062-82627062
T
A
intronic
De novo
-
-
Trost2022
G
PCLO
2-1243-003
chr7:
82679571-82679576
AACTAG
CAAAAA
intronic
De novo
-
-
Trost2022
G
PCLO
2-1261-003
chr7:
82552100-82552103
GTTC
G
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
PCLO
AU1635302
chr7:
82664812-82664812
A
C
intronic
De novo
-
-
Trost2022
G
Yuen2017
G
Source Variant Information
?
, -
Source:
Paper alias:
No records found.
Paper Information
Title
Authors
Technology
Variant source
Cohorts
Design
URL
Pubmed
Subject count
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count
Curation notes
View
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