Publication Details

Results for Lennox2020:

Title Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development
AuthorsLennox, A.L., Hoye, M.L., Jiang, R., Johnson-Kerner, B.L., Suit, L.A., Venkataramanan, S., Sheehan, C.J., Alsina, F.C., Fregeau, B., Aldinger, K.A., Moey, C., Lobach, I., Afenjar, A., Babovic-Vuksanovic, D., Bézieau, S., Blackburn, P.R., Bunt, J., Burglen, L., Campeau, P.M., Charles, P., Chung, B.H.Y., Cogné, B., Curry, C., D’Agostino, M.D., Di Donato, N., Faivre, L., Héron, D., Innes, A.M., Isidor, B., Keren, B., Kimball, A., Klee, E.W., Kuentz, P., Küry, S., Martin-Coignard, D., Mirzaa, G., Mignot, C., Miyake, N., Matsumoto, N., Fujita, A., Nava, C., Nizon, M., Rodriguez, D., Blok, L.S., Thauvin-Robinet, C., Thevenon, J., Vincent, M., Ziegler, A., Dobyns, W., Richards, L.J., Barkovich, A.J., Floor, S.N., Silver, D.L., Sherr, E.H.
Technologytargeted sequencing
Variant sourceTable S1: Comprehensive Phenotypes for DDX3X Patients
Cohortsnetwork of 7 clinical sites
DesignTrios, Simplex
Subject count22
The number of subjects for this study could not be determined directly from the variant data; the value given is that reported by the authors in the publication.
Variant event count22
Curation notesView
Breakdown by exonic function
FunctionVariant Count
frameshift deletion2
frameshift insertion3
frameshift substitution1
nonframeshift deletion1
nonsynonymous SNV9

What am I looking at?

Summary: Information from the literature piece (e.g. Author, Publisher, DOI) and the study experimental design (e.g. sample size, source of probands, sequencing technology.) For a full list of sources of variants, be sure to check out the publications page. Documentation and description of our work can be found on the help page.

Breakdown by exonic function: We annotated the variants with an effect prediction using ANNOVAR. The functions are categories of variants, such as frameshift variants (i.e. frameshift_elongation (SO:0001909)), loss/gain of stop codon, SNVs and non-frameshift variants. See the full list of possible annotations for exonic variants in the documentation.