Few of the genomic coordinates for indels were corrected based on the TransVar reverse annotation (from cDNA to gDNA):

ASXL3, NM_030632:exon12:c.4400_4403dup:p.P1470Nfs*4, was changed from Chr18:31324212 to Chr18:31324215 C>CGATC

DDX53, NM_182699.4:exon1:c.530_549del:p.N177fs, was changed from ChrX:23018700 to ChrX:23018703 AACTTTTACATAGAATCCAAA>A

SND1, NM_014390.4:exon19:c.2168del:p.P723fs,  was changed from Chr7:127724827 to Chr7:127724832 CC>C

The following variants were removed because we were not able to resolve their transcripts and/or coordinates:

SHANK3, NM_001372044.2:exon24:c.4209del:p.S1404fs
DLGAP2, NM_001346810.2:exon9:c.2153G>A:p.G718E
DLGAP2, NM_001346810.2:exon6:c.1289G>T:p.C430F
SHANK3, NM_033517.1:exon21:c.2936G>T:p.R979L
DPP6, NM_001936.5:exon9:c.785C>G:p.P262R
DLGAP2, NM_001346810.2:exon5:c.232C>T:p.P78S